MRI
The Reading Brain Project L1 Adults

This dataset has been published! You can make changes to this Draft page, then create a new version to make them public.

BIDS Validation

3 Warnings Valid

We found 3 Warnings in your dataset. You are not required to fix warnings, but doing so will make your dataset more BIDS compliant.

view 3 warnings in 807 files

Warning: 1287 files

Not all subjects/sessions/runs have the same scanning parameters.

Location:

/sub-01/anat/sub-01_T1w.nii.gz

Reason:

The most common set of dimensions is: 176,220,200 (voxels), This file has the dimensions: 167,205,157 (voxels).

Location:

/sub-01/func/sub-01_task-read_run-1_bold.nii.gz

Reason:

The most common set of dimensions is: 80,80,30,750 (voxels), This file has the dimensions: 80,80,30,600 (voxels).

Location:

/sub-01/func/sub-01_task-read_run-2_bold.nii.gz

Reason:

The most common set of dimensions is: 80,80,30,750 (voxels), This file has the dimensions: 80,80,30,610 (voxels).

Location:

/sub-01/func/sub-01_task-read_run-3_bold.nii.gz

Reason:

The most common set of dimensions is: 80,80,30,750 (voxels), This file has the dimensions: 80,80,30,600 (voxels).

Location:

/sub-01/func/sub-01_task-read_run-4_bold.nii.gz

Reason:

The most common set of dimensions is: 80,80,30,750 (voxels), This file has the dimensions: 80,80,30,629 (voxels).

Location:

/sub-01/func/sub-01_task-read_run-5_bold.nii.gz

Reason:

The most common set of dimensions is: 80,80,30,750 (voxels), This file has the dimensions: 80,80,30,595 (voxels).

Location:

/sub-02/anat/sub-02_T1w.nii.gz

Reason:

The most common set of dimensions is: 176,220,200 (voxels), This file has the dimensions: 174,205,165 (voxels).

Location:

/sub-02/func/sub-02_task-read_run-1_bold.nii.gz

Reason:

The most common set of dimensions is: 80,80,30,750 (voxels), This file has the dimensions: 80,80,30,493 (voxels).

Location:

/sub-02/func/sub-02_task-read_run-2_bold.nii.gz

Reason:

The most common set of dimensions is: 80,80,30,750 (voxels), This file has the dimensions: 80,80,30,489 (voxels).

Location:

/sub-02/func/sub-02_task-read_run-3_bold.nii.gz

Reason:

The most common set of dimensions is: 80,80,30,750 (voxels), This file has the dimensions: 80,80,30,445 (voxels).

and 277 more files

Warning: 2260 files

Tabular file contains custom columns not described in a data dictionary

Location:

/sub-01/func/sub-01_task-read_run-1_events.tsv

Reason:

Tabular file contains custom columns not described in a data dictionary

Evidence:

Columns: Lemmas, Words, RECORDING_SESSION_LABEL, CURRENT_FIX_ADJUSTED, CURRENT_FIX_DURATION, CURRENT_FIX_INTEREST_AREA_ID, CURRENT_FIX_START, SentenceID, SentenceRT, TRUEOffset, TRUEOnset not defined, please define in: /events.json, /task-read_events.json,/run-1_events.json,/task-read_run-1_events.json,/sub-01/sub-01_events.json,/sub-01/sub-01_task-read_events.json,/sub-01/sub-01_run-1_events.json,/sub-01/sub-01_task-read_run-1_events.json,/sub-01/func/sub-01_events.json,/sub-01/func/sub-01_task-read_events.json,/sub-01/func/sub-01_run-1_events.json,/sub-01/func/sub-01_task-read_run-1_events.json

Location:

/sub-01/func/sub-01_task-read_run-2_events.tsv

Reason:

Tabular file contains custom columns not described in a data dictionary

Evidence:

Columns: Lemmas, Words, RECORDING_SESSION_LABEL, CURRENT_FIX_ADJUSTED, CURRENT_FIX_DURATION, CURRENT_FIX_INTEREST_AREA_ID, CURRENT_FIX_START, SentenceID, SentenceRT, TRUEOffset, TRUEOnset not defined, please define in: /events.json, /task-read_events.json,/run-2_events.json,/task-read_run-2_events.json,/sub-01/sub-01_events.json,/sub-01/sub-01_task-read_events.json,/sub-01/sub-01_run-2_events.json,/sub-01/sub-01_task-read_run-2_events.json,/sub-01/func/sub-01_events.json,/sub-01/func/sub-01_task-read_events.json,/sub-01/func/sub-01_run-2_events.json,/sub-01/func/sub-01_task-read_run-2_events.json

Location:

/sub-01/func/sub-01_task-read_run-3_events.tsv

Reason:

Tabular file contains custom columns not described in a data dictionary

Evidence:

Columns: Lemmas, Words, RECORDING_SESSION_LABEL, CURRENT_FIX_ADJUSTED, CURRENT_FIX_DURATION, CURRENT_FIX_INTEREST_AREA_ID, CURRENT_FIX_START, SentenceID, SentenceRT, TRUEOffset, TRUEOnset not defined, please define in: /events.json, /task-read_events.json,/run-3_events.json,/task-read_run-3_events.json,/sub-01/sub-01_events.json,/sub-01/sub-01_task-read_events.json,/sub-01/sub-01_run-3_events.json,/sub-01/sub-01_task-read_run-3_events.json,/sub-01/func/sub-01_events.json,/sub-01/func/sub-01_task-read_events.json,/sub-01/func/sub-01_run-3_events.json,/sub-01/func/sub-01_task-read_run-3_events.json

Location:

/sub-01/func/sub-01_task-read_run-4_events.tsv

Reason:

Tabular file contains custom columns not described in a data dictionary

Evidence:

Columns: Lemmas, Words, RECORDING_SESSION_LABEL, CURRENT_FIX_ADJUSTED, CURRENT_FIX_DURATION, CURRENT_FIX_INTEREST_AREA_ID, CURRENT_FIX_START, SentenceID, SentenceRT, TRUEOffset, TRUEOnset not defined, please define in: /events.json, /task-read_events.json,/run-4_events.json,/task-read_run-4_events.json,/sub-01/sub-01_events.json,/sub-01/sub-01_task-read_events.json,/sub-01/sub-01_run-4_events.json,/sub-01/sub-01_task-read_run-4_events.json,/sub-01/func/sub-01_events.json,/sub-01/func/sub-01_task-read_events.json,/sub-01/func/sub-01_run-4_events.json,/sub-01/func/sub-01_task-read_run-4_events.json

Location:

/sub-01/func/sub-01_task-read_run-5_events.tsv

Reason:

Tabular file contains custom columns not described in a data dictionary

Evidence:

Columns: Lemmas, Words, RECORDING_SESSION_LABEL, CURRENT_FIX_ADJUSTED, CURRENT_FIX_DURATION, CURRENT_FIX_INTEREST_AREA_ID, CURRENT_FIX_START, SentenceID, SentenceRT, TRUEOffset, TRUEOnset not defined, please define in: /events.json, /task-read_events.json,/run-5_events.json,/task-read_run-5_events.json,/sub-01/sub-01_events.json,/sub-01/sub-01_task-read_events.json,/sub-01/sub-01_run-5_events.json,/sub-01/sub-01_task-read_run-5_events.json,/sub-01/func/sub-01_events.json,/sub-01/func/sub-01_task-read_events.json,/sub-01/func/sub-01_run-5_events.json,/sub-01/func/sub-01_task-read_run-5_events.json

Location:

/sub-02/func/sub-02_task-read_run-1_events.tsv

Reason:

Tabular file contains custom columns not described in a data dictionary

Evidence:

Columns: Lemmas, Words, RECORDING_SESSION_LABEL, CURRENT_FIX_ADJUSTED, CURRENT_FIX_DURATION, CURRENT_FIX_INTEREST_AREA_ID, CURRENT_FIX_START, SentenceID, SentenceRT, TRUEOffset, TRUEOnset not defined, please define in: /events.json, /task-read_events.json,/run-1_events.json,/task-read_run-1_events.json,/sub-02/sub-02_events.json,/sub-02/sub-02_task-read_events.json,/sub-02/sub-02_run-1_events.json,/sub-02/sub-02_task-read_run-1_events.json,/sub-02/func/sub-02_events.json,/sub-02/func/sub-02_task-read_events.json,/sub-02/func/sub-02_run-1_events.json,/sub-02/func/sub-02_task-read_run-1_events.json

Location:

/sub-02/func/sub-02_task-read_run-2_events.tsv

Reason:

Tabular file contains custom columns not described in a data dictionary

Evidence:

Columns: Lemmas, Words, RECORDING_SESSION_LABEL, CURRENT_FIX_ADJUSTED, CURRENT_FIX_DURATION, CURRENT_FIX_INTEREST_AREA_ID, CURRENT_FIX_START, SentenceID, SentenceRT, TRUEOffset, TRUEOnset not defined, please define in: /events.json, /task-read_events.json,/run-2_events.json,/task-read_run-2_events.json,/sub-02/sub-02_events.json,/sub-02/sub-02_task-read_events.json,/sub-02/sub-02_run-2_events.json,/sub-02/sub-02_task-read_run-2_events.json,/sub-02/func/sub-02_events.json,/sub-02/func/sub-02_task-read_events.json,/sub-02/func/sub-02_run-2_events.json,/sub-02/func/sub-02_task-read_run-2_events.json

Location:

/sub-02/func/sub-02_task-read_run-3_events.tsv

Reason:

Tabular file contains custom columns not described in a data dictionary

Evidence:

Columns: Lemmas, Words, RECORDING_SESSION_LABEL, CURRENT_FIX_ADJUSTED, CURRENT_FIX_DURATION, CURRENT_FIX_INTEREST_AREA_ID, CURRENT_FIX_START, SentenceID, SentenceRT, TRUEOffset, TRUEOnset not defined, please define in: /events.json, /task-read_events.json,/run-3_events.json,/task-read_run-3_events.json,/sub-02/sub-02_events.json,/sub-02/sub-02_task-read_events.json,/sub-02/sub-02_run-3_events.json,/sub-02/sub-02_task-read_run-3_events.json,/sub-02/func/sub-02_events.json,/sub-02/func/sub-02_task-read_events.json,/sub-02/func/sub-02_run-3_events.json,/sub-02/func/sub-02_task-read_run-3_events.json

Location:

/sub-02/func/sub-02_task-read_run-4_events.tsv

Reason:

Tabular file contains custom columns not described in a data dictionary

Evidence:

Columns: Lemmas, Words, RECORDING_SESSION_LABEL, CURRENT_FIX_ADJUSTED, CURRENT_FIX_DURATION, CURRENT_FIX_INTEREST_AREA_ID, CURRENT_FIX_START, SentenceID, SentenceRT, TRUEOffset, TRUEOnset not defined, please define in: /events.json, /task-read_events.json,/run-4_events.json,/task-read_run-4_events.json,/sub-02/sub-02_events.json,/sub-02/sub-02_task-read_events.json,/sub-02/sub-02_run-4_events.json,/sub-02/sub-02_task-read_run-4_events.json,/sub-02/func/sub-02_events.json,/sub-02/func/sub-02_task-read_events.json,/sub-02/func/sub-02_run-4_events.json,/sub-02/func/sub-02_task-read_run-4_events.json

Location:

/sub-02/func/sub-02_task-read_run-5_events.tsv

Reason:

Tabular file contains custom columns not described in a data dictionary

Evidence:

Columns: Lemmas, Words, RECORDING_SESSION_LABEL, CURRENT_FIX_ADJUSTED, CURRENT_FIX_DURATION, CURRENT_FIX_INTEREST_AREA_ID, CURRENT_FIX_START, SentenceID, SentenceRT, TRUEOffset, TRUEOnset not defined, please define in: /events.json, /task-read_events.json,/run-5_events.json,/task-read_run-5_events.json,/sub-02/sub-02_events.json,/sub-02/sub-02_task-read_events.json,/sub-02/sub-02_run-5_events.json,/sub-02/sub-02_task-read_run-5_events.json,/sub-02/func/sub-02_events.json,/sub-02/func/sub-02_task-read_events.json,/sub-02/func/sub-02_run-5_events.json,/sub-02/func/sub-02_task-read_run-5_events.json

and 250 more files

Warning: 3260 files

The onset of the last event is after the total duration of the corresponding scan. This design is suspiciously long.

Location:

/sub-01/func/sub-01_task-read_run-1_events.tsv

Reason:

The onset of the last event is after the total duration of the corresponding scan. This design is suspiciously long.

Location:

/sub-01/func/sub-01_task-read_run-2_events.tsv

Reason:

The onset of the last event is after the total duration of the corresponding scan. This design is suspiciously long.

Location:

/sub-01/func/sub-01_task-read_run-3_events.tsv

Reason:

The onset of the last event is after the total duration of the corresponding scan. This design is suspiciously long.

Location:

/sub-01/func/sub-01_task-read_run-4_events.tsv

Reason:

The onset of the last event is after the total duration of the corresponding scan. This design is suspiciously long.

Location:

/sub-01/func/sub-01_task-read_run-5_events.tsv

Reason:

The onset of the last event is after the total duration of the corresponding scan. This design is suspiciously long.

Location:

/sub-02/func/sub-02_task-read_run-1_events.tsv

Reason:

The onset of the last event is after the total duration of the corresponding scan. This design is suspiciously long.

Location:

/sub-02/func/sub-02_task-read_run-2_events.tsv

Reason:

The onset of the last event is after the total duration of the corresponding scan. This design is suspiciously long.

Location:

/sub-02/func/sub-02_task-read_run-3_events.tsv

Reason:

The onset of the last event is after the total duration of the corresponding scan. This design is suspiciously long.

Location:

/sub-02/func/sub-02_task-read_run-4_events.tsv

Reason:

The onset of the last event is after the total duration of the corresponding scan. This design is suspiciously long.

Location:

/sub-02/func/sub-02_task-read_run-5_events.tsv

Reason:

The onset of the last event is after the total duration of the corresponding scan. This design is suspiciously long.

and 250 more files

FilesDownloadMetadata

dir-PA_epi.json

OpenNeuro Accession Number

ds003974

Authors

Ping Li
Chun-Ting Hsu
Ben Schloss
Anya Yu
Lindsey Ma
Marissa Scotto
Friederike Seyfried
Chanyuan Gu

Available Modalities

Versions

Draft

Updated: 2022-01-09

Tasks

read task, rest

Uploaded by

Chanyuan Gu on 2022-01-07 - 7 months ago

Last Updated

2022-01-09 - 7 months ago

Sessions

1

Participants

52

Dataset DOI

doi:10.18112/openneuro.ds003974.v3.0.0

License

CC0

Acknowledgements

We would like to acknowledge the generous support from the National Science Foundation through the NCS program (#1633817, #1533625), and members of the Brain, Language, and Computation Lab who have contributed to this project in the past in various capacities: Roy Clariana and Bonnie Meyer (Co-PIs), Jake Follmer, Chih-ting Chang, Jennifer Legault, Jing Yang, Shin-Yi Fang (former graduate students or postdocs), Olivia Barnum (lab manager), Rose Yuratovac (former lab manager), and Tanner Quiggle, Shara Chopra and Ahmed Yumna (former undergraduate students). We also thank the Center for NMR Research of Penn State Milton S. Hershey Medical Center that has enabled the smooth collection of data reported here (Emma Cartisano, YunQing Li, Sebastian Rupprecht, Chris Sica, Qing X. Yang, Jeff Vesek, and Jian-li Wang).

How to Acknowledge

When using the data, please cite the following 'This data was obtained from the OpenNeuro database.' Please also cite the following references: Li & Clariana (2019) and Follmer et al. (2018) -- see full references below.

Funding

This project was supported by the National Science Foundation as part of the Integrative Strategies for Understanding Neural and Cognitive Systems (NCS) program (#BCS-1533625).

References and Links

Please cite the following papers when using this data:
Li, P., & Clariana, R. (2019) Reading comprehension in L1 and L2: An integrative appraoch. Journal of Neurolinguistics, 50, 94-105.(https://doi.org/10.1016/j.jneuroling.2018.03.005)
Follmer, J., Fang, S., Clariana, R., Meyer, B., & Li, P (2018). What predicts adult readers' understanding of STEM texts? Reading and Writing, 31, 185-214.(https://doi.org/10.1007/s11145-017-9781-x)
Hsu, C.-T., Clariana, R., Schloss, B., & Li, P. (2019). Neurocognitive signatures of naturalistic reading of scientific texts: a fixation-related fMRI study. Scientific Reports, 9(1), 1-16. (https://doi.org/10.1038/s41598-019-47176-7)
Please refer to the website for more detailed information of the project:
http://blclab.org/reading_brain

Ethics Approvals

N/A