resting state fMRI of 17 idiopathic epileptic dogs and 20 healthy control dogs

uploaded by Katrin Beckmann on 2021-10-02 - 23 days ago
last modified on 2021-09-27 - 28 days ago
authored by Katrin M. Beckmann, Adriano Wang-Leandro, Henning Richter, Rima N. Bektas, Frank Steffen, Matthias Dennler, Ines Carrera, Sven Haller
3126
We found 4 Warnings in your dataset. You are not required to fix warnings, but doing so will make your dataset more BIDS compliant.

/sub-01/func/sub-01_task-rest_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-rest_bold.json, /sub-01/sub-01_task-rest_bold.json, /sub-01/func/sub-01_task-rest_bold.json

/sub-02/func/sub-02_task-rest_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-rest_bold.json, /sub-02/sub-02_task-rest_bold.json, /sub-02/func/sub-02_task-rest_bold.json

/sub-03/func/sub-03_task-rest_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-rest_bold.json, /sub-03/sub-03_task-rest_bold.json, /sub-03/func/sub-03_task-rest_bold.json

/sub-04/func/sub-04_task-rest_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-rest_bold.json, /sub-04/sub-04_task-rest_bold.json, /sub-04/func/sub-04_task-rest_bold.json

/sub-05/func/sub-05_task-rest_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-rest_bold.json, /sub-05/sub-05_task-rest_bold.json, /sub-05/func/sub-05_task-rest_bold.json

/sub-06/func/sub-06_task-rest_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-rest_bold.json, /sub-06/sub-06_task-rest_bold.json, /sub-06/func/sub-06_task-rest_bold.json

/sub-07/func/sub-07_task-rest_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-rest_bold.json, /sub-07/sub-07_task-rest_bold.json, /sub-07/func/sub-07_task-rest_bold.json

/sub-08/func/sub-08_task-rest_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-rest_bold.json, /sub-08/sub-08_task-rest_bold.json, /sub-08/func/sub-08_task-rest_bold.json

/sub-09/func/sub-09_task-rest_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-rest_bold.json, /sub-09/sub-09_task-rest_bold.json, /sub-09/func/sub-09_task-rest_bold.json

/sub-10/func/sub-10_task-rest_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-rest_bold.json, /sub-10/sub-10_task-rest_bold.json, /sub-10/func/sub-10_task-rest_bold.json

and 27 more files

/sub-01/anat/sub-01_T1w.nii.gz

The most common set of dimensions is: 250,336,336 (voxels), This file has the dimensions: 250,320,320 (voxels). The most common resolution is: 0.60mm x 0.40mm x 0.40mm, This file has the resolution: 0.60mm x 0.41mm x 0.41mm.

/sub-01/func/sub-01_task-rest_bold.nii.gz

The most common resolution is: 1.47mm x 1.47mm x 3.00mm x 2.00s, This file has the resolution: 1.47mm x 1.47mm x 2.95mm x 1.00s.

/sub-02/anat/sub-02_T1w.nii.gz

The most common set of dimensions is: 250,336,336 (voxels), This file has the dimensions: 250,320,320 (voxels). The most common resolution is: 0.60mm x 0.40mm x 0.40mm, This file has the resolution: 0.60mm x 0.41mm x 0.41mm.

/sub-02/func/sub-02_task-rest_bold.nii.gz

The most common resolution is: 1.47mm x 1.47mm x 3.00mm x 2.00s, This file has the resolution: 1.47mm x 1.47mm x 2.92mm x 1.00s.

/sub-03/anat/sub-03_T1w.nii.gz

The most common set of dimensions is: 250,336,336 (voxels), This file has the dimensions: 250,320,320 (voxels). The most common resolution is: 0.60mm x 0.40mm x 0.40mm, This file has the resolution: 0.60mm x 0.41mm x 0.41mm.

/sub-03/func/sub-03_task-rest_bold.nii.gz

The most common resolution is: 1.47mm x 1.47mm x 3.00mm x 2.00s, This file has the resolution: 1.47mm x 1.47mm x 2.92mm x 1.00s.

/sub-04/anat/sub-04_T1w.nii.gz

The most common set of dimensions is: 250,336,336 (voxels), This file has the dimensions: 250,320,320 (voxels). The most common resolution is: 0.60mm x 0.40mm x 0.40mm, This file has the resolution: 0.60mm x 0.41mm x 0.41mm.

/sub-04/func/sub-04_task-rest_bold.nii.gz

The most common resolution is: 1.47mm x 1.47mm x 3.00mm x 2.00s, This file has the resolution: 1.47mm x 1.47mm x 2.96mm x 1.00s.

/sub-05/anat/sub-05_T1w.nii.gz

The most common set of dimensions is: 250,336,336 (voxels), This file has the dimensions: 250,320,320 (voxels). The most common resolution is: 0.60mm x 0.40mm x 0.40mm, This file has the resolution: 0.60mm x 0.41mm x 0.41mm.

/sub-05/func/sub-05_task-rest_bold.nii.gz

The most common resolution is: 1.47mm x 1.47mm x 3.00mm x 2.00s, This file has the resolution: 1.47mm x 1.47mm x 2.95mm x 1.00s.

and 40 more files

/participants.tsv

Tabular file contains custom columns not described in a data dictionary

Columns: breed-phenotype, age (years), gender , Body weight (kg), displacematn mean absolut (mm), displament mean relative (mm), Medical treatment at the timepoint of MRI, Time between last reported seizure to MRI, Time between first seizure to MRI, Annfalsstyp, postictal agression, interictal behavioural changes, cluster-seizures before MRI, Status Epileptikus before MRI, Sevofluran level start BOLD (%), Sevofluran level end BOLD (%), HF (/min), RR (/min) not defined, please define in: /participants.json

The recommended file /README is missing. See Section 03 (Modality agnostic files) of the BIDS specification.


OpenNeuro Accession Number: ds003830
Files: 114, Size: 8.48GB, Subjects: 37, Session: 1
Available Tasks: resting
Available Modalities: MRI

README

Authors

  • Katrin M. Beckmann
  • Adriano Wang-Leandro
  • Henning Richter
  • Rima N. Bektas
  • Frank Steffen
  • Matthias Dennler
  • Ines Carrera
  • Sven Haller

Dataset DOI

10.18112/openneuro.ds003830.v1.0.0

License

CC0

Acknowledgements

We are grateful to Jens Lehmann for his technical assistance in running the postprocessing and to Manuela Wieser for her assistance in the conduction of the study.

How to Acknowledge

Please cite this paper: XXX; („Increased resting state connectivity in the anterior default mode network of idiopathic epileptic dogs“ under revision at nature scintific reports)

Funding

  • This research was partially financially supported by the „Albert-Heim-Stiftung“ and the „Stiftung für Kleintiere“ der Vetsuisse-Fakultät Universität Zürich

References and Links

Ethics Approvals

  • The present study was approved by the Cantonal Veterinary Office of Zurich (ZH272/16 and ZH046/20) and all procedures were performed in accordance with the relevant guidelines and regulations.

How To Cite

Copy
Katrin M. Beckmann and Adriano Wang-Leandro and Henning Richter and Rima N. Bektas and Frank Steffen and Matthias Dennler and Ines Carrera and Sven Haller (2021). resting state fMRI of 17 idiopathic epileptic dogs and 20 healthy control dogs. OpenNeuro. [Dataset] doi: 10.18112/openneuro.ds003830.v1.0.0
More citation info

resting state fMRI of 17 idiopathic epileptic dogs and 20 healthy control dogs

uploaded by Katrin Beckmann on 2021-10-02 - 23 days ago
last modified on 2021-09-27 - 28 days ago
authored by Katrin M. Beckmann, Adriano Wang-Leandro, Henning Richter, Rima N. Bektas, Frank Steffen, Matthias Dennler, Ines Carrera, Sven Haller
3126

OpenNeuro Accession Number: ds003830
Files: 114, Size: 8.48GB, Subjects: 37, Session: 1
Available Tasks: resting
Available Modalities: MRI

README

Authors

  • Katrin M. Beckmann
  • Adriano Wang-Leandro
  • Henning Richter
  • Rima N. Bektas
  • Frank Steffen
  • Matthias Dennler
  • Ines Carrera
  • Sven Haller

Dataset DOI

10.18112/openneuro.ds003830.v1.0.0

License

CC0

Acknowledgements

We are grateful to Jens Lehmann for his technical assistance in running the postprocessing and to Manuela Wieser for her assistance in the conduction of the study.

How to Acknowledge

Please cite this paper: XXX; („Increased resting state connectivity in the anterior default mode network of idiopathic epileptic dogs“ under revision at nature scintific reports)

Funding

  • This research was partially financially supported by the „Albert-Heim-Stiftung“ and the „Stiftung für Kleintiere“ der Vetsuisse-Fakultät Universität Zürich

References and Links

Ethics Approvals

  • The present study was approved by the Cantonal Veterinary Office of Zurich (ZH272/16 and ZH046/20) and all procedures were performed in accordance with the relevant guidelines and regulations.

How To Cite

Copy
Katrin M. Beckmann and Adriano Wang-Leandro and Henning Richter and Rima N. Bektas and Frank Steffen and Matthias Dennler and Ines Carrera and Sven Haller (2021). resting state fMRI of 17 idiopathic epileptic dogs and 20 healthy control dogs. OpenNeuro. [Dataset] doi: 10.18112/openneuro.ds003830.v1.0.0
More citation info

Dataset File Tree

Git Hash: 9ff4e35 

BIDS Validation

We found 4 Warnings in your dataset. You are not required to fix warnings, but doing so will make your dataset more BIDS compliant.

/sub-01/func/sub-01_task-rest_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-rest_bold.json, /sub-01/sub-01_task-rest_bold.json, /sub-01/func/sub-01_task-rest_bold.json

/sub-02/func/sub-02_task-rest_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-rest_bold.json, /sub-02/sub-02_task-rest_bold.json, /sub-02/func/sub-02_task-rest_bold.json

/sub-03/func/sub-03_task-rest_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-rest_bold.json, /sub-03/sub-03_task-rest_bold.json, /sub-03/func/sub-03_task-rest_bold.json

/sub-04/func/sub-04_task-rest_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-rest_bold.json, /sub-04/sub-04_task-rest_bold.json, /sub-04/func/sub-04_task-rest_bold.json

/sub-05/func/sub-05_task-rest_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-rest_bold.json, /sub-05/sub-05_task-rest_bold.json, /sub-05/func/sub-05_task-rest_bold.json

/sub-06/func/sub-06_task-rest_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-rest_bold.json, /sub-06/sub-06_task-rest_bold.json, /sub-06/func/sub-06_task-rest_bold.json

/sub-07/func/sub-07_task-rest_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-rest_bold.json, /sub-07/sub-07_task-rest_bold.json, /sub-07/func/sub-07_task-rest_bold.json

/sub-08/func/sub-08_task-rest_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-rest_bold.json, /sub-08/sub-08_task-rest_bold.json, /sub-08/func/sub-08_task-rest_bold.json

/sub-09/func/sub-09_task-rest_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-rest_bold.json, /sub-09/sub-09_task-rest_bold.json, /sub-09/func/sub-09_task-rest_bold.json

/sub-10/func/sub-10_task-rest_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-rest_bold.json, /sub-10/sub-10_task-rest_bold.json, /sub-10/func/sub-10_task-rest_bold.json

and 27 more files

/sub-01/anat/sub-01_T1w.nii.gz

The most common set of dimensions is: 250,336,336 (voxels), This file has the dimensions: 250,320,320 (voxels). The most common resolution is: 0.60mm x 0.40mm x 0.40mm, This file has the resolution: 0.60mm x 0.41mm x 0.41mm.

/sub-01/func/sub-01_task-rest_bold.nii.gz

The most common resolution is: 1.47mm x 1.47mm x 3.00mm x 2.00s, This file has the resolution: 1.47mm x 1.47mm x 2.95mm x 1.00s.

/sub-02/anat/sub-02_T1w.nii.gz

The most common set of dimensions is: 250,336,336 (voxels), This file has the dimensions: 250,320,320 (voxels). The most common resolution is: 0.60mm x 0.40mm x 0.40mm, This file has the resolution: 0.60mm x 0.41mm x 0.41mm.

/sub-02/func/sub-02_task-rest_bold.nii.gz

The most common resolution is: 1.47mm x 1.47mm x 3.00mm x 2.00s, This file has the resolution: 1.47mm x 1.47mm x 2.92mm x 1.00s.

/sub-03/anat/sub-03_T1w.nii.gz

The most common set of dimensions is: 250,336,336 (voxels), This file has the dimensions: 250,320,320 (voxels). The most common resolution is: 0.60mm x 0.40mm x 0.40mm, This file has the resolution: 0.60mm x 0.41mm x 0.41mm.

/sub-03/func/sub-03_task-rest_bold.nii.gz

The most common resolution is: 1.47mm x 1.47mm x 3.00mm x 2.00s, This file has the resolution: 1.47mm x 1.47mm x 2.92mm x 1.00s.

/sub-04/anat/sub-04_T1w.nii.gz

The most common set of dimensions is: 250,336,336 (voxels), This file has the dimensions: 250,320,320 (voxels). The most common resolution is: 0.60mm x 0.40mm x 0.40mm, This file has the resolution: 0.60mm x 0.41mm x 0.41mm.

/sub-04/func/sub-04_task-rest_bold.nii.gz

The most common resolution is: 1.47mm x 1.47mm x 3.00mm x 2.00s, This file has the resolution: 1.47mm x 1.47mm x 2.96mm x 1.00s.

/sub-05/anat/sub-05_T1w.nii.gz

The most common set of dimensions is: 250,336,336 (voxels), This file has the dimensions: 250,320,320 (voxels). The most common resolution is: 0.60mm x 0.40mm x 0.40mm, This file has the resolution: 0.60mm x 0.41mm x 0.41mm.

/sub-05/func/sub-05_task-rest_bold.nii.gz

The most common resolution is: 1.47mm x 1.47mm x 3.00mm x 2.00s, This file has the resolution: 1.47mm x 1.47mm x 2.95mm x 1.00s.

and 40 more files

/participants.tsv

Tabular file contains custom columns not described in a data dictionary

Columns: breed-phenotype, age (years), gender , Body weight (kg), displacematn mean absolut (mm), displament mean relative (mm), Medical treatment at the timepoint of MRI, Time between last reported seizure to MRI, Time between first seizure to MRI, Annfalsstyp, postictal agression, interictal behavioural changes, cluster-seizures before MRI, Status Epileptikus before MRI, Sevofluran level start BOLD (%), Sevofluran level end BOLD (%), HF (/min), RR (/min) not defined, please define in: /participants.json

The recommended file /README is missing. See Section 03 (Modality agnostic files) of the BIDS specification.

Dataset File Tree

Git Hash: 9ff4e35 

Comments

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