Simultaneous EEG and fMRI signals during sleep from humans

uploaded by yameng gu on 2021-08-16 - about 1 month ago
last modified on 2021-08-25 - 24 days ago
authored by Yameng Gu, Feng Han, Lucas E. Sainburg, Margeaux M. Schade, Orfeu M. Buxton, Jeff H. Duyn, Xiao Liu
1135
We found 1 Warning in your dataset. You are not required to fix warnings, but doing so will make your dataset more BIDS compliant.

/sub-01/func/sub-01_task-sleep_run-1_bold.nii.gz

Task scans should have a corresponding events.tsv file. It can be included one of the following locations: /events.tsv, /task-sleep_events.tsv, /run-1_events.tsv, /task-sleep_run-1_events.tsv, /sub-01/sub-01_events.tsv, /sub-01/sub-01_task-sleep_events.tsv, /sub-01/sub-01_run-1_events.tsv, /sub-01/sub-01_task-sleep_run-1_events.tsv, /sub-01/func/sub-01_events.tsv, /sub-01/func/sub-01_task-sleep_events.tsv, /sub-01/func/sub-01_run-1_events.tsv, /sub-01/func/sub-01_task-sleep_run-1_events.tsv

/sub-01/func/sub-01_task-sleep_run-2_bold.nii.gz

Task scans should have a corresponding events.tsv file. It can be included one of the following locations: /events.tsv, /task-sleep_events.tsv, /run-2_events.tsv, /task-sleep_run-2_events.tsv, /sub-01/sub-01_events.tsv, /sub-01/sub-01_task-sleep_events.tsv, /sub-01/sub-01_run-2_events.tsv, /sub-01/sub-01_task-sleep_run-2_events.tsv, /sub-01/func/sub-01_events.tsv, /sub-01/func/sub-01_task-sleep_events.tsv, /sub-01/func/sub-01_run-2_events.tsv, /sub-01/func/sub-01_task-sleep_run-2_events.tsv

/sub-01/func/sub-01_task-sleep_run-3_bold.nii.gz

Task scans should have a corresponding events.tsv file. It can be included one of the following locations: /events.tsv, /task-sleep_events.tsv, /run-3_events.tsv, /task-sleep_run-3_events.tsv, /sub-01/sub-01_events.tsv, /sub-01/sub-01_task-sleep_events.tsv, /sub-01/sub-01_run-3_events.tsv, /sub-01/sub-01_task-sleep_run-3_events.tsv, /sub-01/func/sub-01_events.tsv, /sub-01/func/sub-01_task-sleep_events.tsv, /sub-01/func/sub-01_run-3_events.tsv, /sub-01/func/sub-01_task-sleep_run-3_events.tsv

/sub-03/func/sub-03_task-sleep_run-1_bold.nii.gz

Task scans should have a corresponding events.tsv file. It can be included one of the following locations: /events.tsv, /task-sleep_events.tsv, /run-1_events.tsv, /task-sleep_run-1_events.tsv, /sub-03/sub-03_events.tsv, /sub-03/sub-03_task-sleep_events.tsv, /sub-03/sub-03_run-1_events.tsv, /sub-03/sub-03_task-sleep_run-1_events.tsv, /sub-03/func/sub-03_events.tsv, /sub-03/func/sub-03_task-sleep_events.tsv, /sub-03/func/sub-03_run-1_events.tsv, /sub-03/func/sub-03_task-sleep_run-1_events.tsv

/sub-03/func/sub-03_task-sleep_run-2_bold.nii.gz

Task scans should have a corresponding events.tsv file. It can be included one of the following locations: /events.tsv, /task-sleep_events.tsv, /run-2_events.tsv, /task-sleep_run-2_events.tsv, /sub-03/sub-03_events.tsv, /sub-03/sub-03_task-sleep_events.tsv, /sub-03/sub-03_run-2_events.tsv, /sub-03/sub-03_task-sleep_run-2_events.tsv, /sub-03/func/sub-03_events.tsv, /sub-03/func/sub-03_task-sleep_events.tsv, /sub-03/func/sub-03_run-2_events.tsv, /sub-03/func/sub-03_task-sleep_run-2_events.tsv

/sub-03/func/sub-03_task-sleep_run-3_bold.nii.gz

Task scans should have a corresponding events.tsv file. It can be included one of the following locations: /events.tsv, /task-sleep_events.tsv, /run-3_events.tsv, /task-sleep_run-3_events.tsv, /sub-03/sub-03_events.tsv, /sub-03/sub-03_task-sleep_events.tsv, /sub-03/sub-03_run-3_events.tsv, /sub-03/sub-03_task-sleep_run-3_events.tsv, /sub-03/func/sub-03_events.tsv, /sub-03/func/sub-03_task-sleep_events.tsv, /sub-03/func/sub-03_run-3_events.tsv, /sub-03/func/sub-03_task-sleep_run-3_events.tsv

/sub-03/func/sub-03_task-sleep_run-4_bold.nii.gz

Task scans should have a corresponding events.tsv file. It can be included one of the following locations: /events.tsv, /task-sleep_events.tsv, /run-4_events.tsv, /task-sleep_run-4_events.tsv, /sub-03/sub-03_events.tsv, /sub-03/sub-03_task-sleep_events.tsv, /sub-03/sub-03_run-4_events.tsv, /sub-03/sub-03_task-sleep_run-4_events.tsv, /sub-03/func/sub-03_events.tsv, /sub-03/func/sub-03_task-sleep_events.tsv, /sub-03/func/sub-03_run-4_events.tsv, /sub-03/func/sub-03_task-sleep_run-4_events.tsv

/sub-03/func/sub-03_task-sleep_run-5_bold.nii.gz

Task scans should have a corresponding events.tsv file. It can be included one of the following locations: /events.tsv, /task-sleep_events.tsv, /run-5_events.tsv, /task-sleep_run-5_events.tsv, /sub-03/sub-03_events.tsv, /sub-03/sub-03_task-sleep_events.tsv, /sub-03/sub-03_run-5_events.tsv, /sub-03/sub-03_task-sleep_run-5_events.tsv, /sub-03/func/sub-03_events.tsv, /sub-03/func/sub-03_task-sleep_events.tsv, /sub-03/func/sub-03_run-5_events.tsv, /sub-03/func/sub-03_task-sleep_run-5_events.tsv

/sub-03/func/sub-03_task-sleep_run-6_bold.nii.gz

Task scans should have a corresponding events.tsv file. It can be included one of the following locations: /events.tsv, /task-sleep_events.tsv, /run-6_events.tsv, /task-sleep_run-6_events.tsv, /sub-03/sub-03_events.tsv, /sub-03/sub-03_task-sleep_events.tsv, /sub-03/sub-03_run-6_events.tsv, /sub-03/sub-03_task-sleep_run-6_events.tsv, /sub-03/func/sub-03_events.tsv, /sub-03/func/sub-03_task-sleep_events.tsv, /sub-03/func/sub-03_run-6_events.tsv, /sub-03/func/sub-03_task-sleep_run-6_events.tsv

/sub-03/func/sub-03_task-sleep_run-7_bold.nii.gz

Task scans should have a corresponding events.tsv file. It can be included one of the following locations: /events.tsv, /task-sleep_events.tsv, /run-7_events.tsv, /task-sleep_run-7_events.tsv, /sub-03/sub-03_events.tsv, /sub-03/sub-03_task-sleep_events.tsv, /sub-03/sub-03_run-7_events.tsv, /sub-03/sub-03_task-sleep_run-7_events.tsv, /sub-03/func/sub-03_events.tsv, /sub-03/func/sub-03_task-sleep_events.tsv, /sub-03/func/sub-03_run-7_events.tsv, /sub-03/func/sub-03_task-sleep_run-7_events.tsv

and 179 more files

OpenNeuro Accession Number: ds003768
Files: 1344, Size: 86.46GB, Subjects: 33, Session: 1
Available Tasks: rest, sleep
Available Modalities: EEG, MRI

README

This dataset included 33 healthy participants collected at Pennsylvania State University with informed consent. Simultaneously collected EEG and BOLD signals for each participant were recorded and organized at each folder.

Each scanning section consisted of an anatomical session, two 10-min resting-state sessions, and several 15-min sleep sessions. The first resting-state session was conducted before a visual-motor adaptation task (Albouy et al, Journal of Sleep Research, 2013) and the second resting-state session was conducted after a visual-motor adaptation task. The scored sleep stages for these 33 subjects were organized under 'sourcedata' folder. Each TSV file contained the sleep stages for each 30-sec epoch across different sessions for each subject.

MR imaging data were collected on a 3 Tesla Prisma Siemens Fit scanner using a Siemens 20-channel receive-array coil. Anatomical images were acquired using a MPRAGE sequence (TR: 2300 milliseconds, TE: 2.28 milliseconds, 1mm isotropic spatial resolution, FOV: 256 millimeters, flip angle: 8 degrees, matrix size: 256×256×192, acceleration factor: 2). Blood oxygenation level-dependent (BOLD) fMRI data were acquired using an EPI sequence (TR: 2100 milliseconds, TE: 25 milliseconds, slice thickness: 4mm, slices: 35, FOV: 240mm, in-plane resolution: 3mm×3mm).

EEG data were collected using a 32-channel MR-compatible EEG system from Brain Products, Germany. Electrodes were placed based on the 10-20 international system. EOG and ECG recorded eye movement and cardiac signal, respectively. EEG data were collected at a sampling rate of 5000 Hz with a band-pass filter of 0-250 Hz. R128 in the EEG signals corresponds to the BOLD fMRI volume trigger.

For more information or any questions about this dataset, please see the manuscript on bioRxiv or contact Yameng Gu (ymgu95@gmail.com)

Authors

  • Yameng Gu
  • Feng Han
  • Lucas E. Sainburg
  • Margeaux M. Schade
  • Orfeu M. Buxton
  • Jeff H. Duyn
  • Xiao Liu

Dataset DOI

10.18112/openneuro.ds003768.v1.0.1

License

CC0

Acknowledgements

We would like to express special thanks to Dr. Thomas Beck and Dr. Josef Pfeuffer, Siemens AG, Healthcare Sector for providing us with the Advanced fMRI package WIP package. We would also like to thank Dr. Xiaoxiao Bai, Jack W. Williams and Youyou Yu for their help during the experiment. Data analysis were conducted using the computing resources provided by the Institute for Computational and Data Sciences at the Pennsylvania State University (https://icds.psu.edu).

How to Acknowledge

Please cite the paper

Funding

  • National Institutes of Health Pathway to Independence Award K99/R00 (5R00NS092996-03)
  • Brain Initiative Award (1RF1MH123247-01)
  • National Institutes of Health R01 Award (1R01NS113889-01A1)

References and Links

  • An orderly sequence of autonomic and neural events at transient arousal changes, Yameng Gu, Feng Han, Lucas E. Sainburg, Margeaux M. Schade, Orfeu M. Buxton, Jeff H. Duyn, Xiao Liu, bioRxiv, 2021

Ethics Approvals

How To Cite

Copy
Yameng Gu and Feng Han and Lucas E. Sainburg and Margeaux M. Schade and Orfeu M. Buxton and Jeff H. Duyn and Xiao Liu (2021). Simultaneous EEG and fMRI signals during sleep from humans. OpenNeuro. [Dataset] doi: 10.18112/openneuro.ds003768.v1.0.1
More citation info

Simultaneous EEG and fMRI signals during sleep from humans

uploaded by yameng gu on 2021-08-16 - about 1 month ago
last modified on 2021-08-25 - 24 days ago
authored by Yameng Gu, Feng Han, Lucas E. Sainburg, Margeaux M. Schade, Orfeu M. Buxton, Jeff H. Duyn, Xiao Liu
1135

OpenNeuro Accession Number: ds003768
Files: 1344, Size: 86.46GB, Subjects: 33, Session: 1
Available Tasks: rest, sleep
Available Modalities: EEG, MRI

README

This dataset included 33 healthy participants collected at Pennsylvania State University with informed consent. Simultaneously collected EEG and BOLD signals for each participant were recorded and organized at each folder.

Each scanning section consisted of an anatomical session, two 10-min resting-state sessions, and several 15-min sleep sessions. The first resting-state session was conducted before a visual-motor adaptation task (Albouy et al, Journal of Sleep Research, 2013) and the second resting-state session was conducted after a visual-motor adaptation task. The scored sleep stages for these 33 subjects were organized under 'sourcedata' folder. Each TSV file contained the sleep stages for each 30-sec epoch across different sessions for each subject.

MR imaging data were collected on a 3 Tesla Prisma Siemens Fit scanner using a Siemens 20-channel receive-array coil. Anatomical images were acquired using a MPRAGE sequence (TR: 2300 milliseconds, TE: 2.28 milliseconds, 1mm isotropic spatial resolution, FOV: 256 millimeters, flip angle: 8 degrees, matrix size: 256×256×192, acceleration factor: 2). Blood oxygenation level-dependent (BOLD) fMRI data were acquired using an EPI sequence (TR: 2100 milliseconds, TE: 25 milliseconds, slice thickness: 4mm, slices: 35, FOV: 240mm, in-plane resolution: 3mm×3mm).

EEG data were collected using a 32-channel MR-compatible EEG system from Brain Products, Germany. Electrodes were placed based on the 10-20 international system. EOG and ECG recorded eye movement and cardiac signal, respectively. EEG data were collected at a sampling rate of 5000 Hz with a band-pass filter of 0-250 Hz. R128 in the EEG signals corresponds to the BOLD fMRI volume trigger.

For more information or any questions about this dataset, please see the manuscript on bioRxiv or contact Yameng Gu (ymgu95@gmail.com)

Authors

  • Yameng Gu
  • Feng Han
  • Lucas E. Sainburg
  • Margeaux M. Schade
  • Orfeu M. Buxton
  • Jeff H. Duyn
  • Xiao Liu

Dataset DOI

10.18112/openneuro.ds003768.v1.0.1

License

CC0

Acknowledgements

We would like to express special thanks to Dr. Thomas Beck and Dr. Josef Pfeuffer, Siemens AG, Healthcare Sector for providing us with the Advanced fMRI package WIP package. We would also like to thank Dr. Xiaoxiao Bai, Jack W. Williams and Youyou Yu for their help during the experiment. Data analysis were conducted using the computing resources provided by the Institute for Computational and Data Sciences at the Pennsylvania State University (https://icds.psu.edu).

How to Acknowledge

Please cite the paper

Funding

  • National Institutes of Health Pathway to Independence Award K99/R00 (5R00NS092996-03)
  • Brain Initiative Award (1RF1MH123247-01)
  • National Institutes of Health R01 Award (1R01NS113889-01A1)

References and Links

  • An orderly sequence of autonomic and neural events at transient arousal changes, Yameng Gu, Feng Han, Lucas E. Sainburg, Margeaux M. Schade, Orfeu M. Buxton, Jeff H. Duyn, Xiao Liu, bioRxiv, 2021

Ethics Approvals

How To Cite

Copy
Yameng Gu and Feng Han and Lucas E. Sainburg and Margeaux M. Schade and Orfeu M. Buxton and Jeff H. Duyn and Xiao Liu (2021). Simultaneous EEG and fMRI signals during sleep from humans. OpenNeuro. [Dataset] doi: 10.18112/openneuro.ds003768.v1.0.1
More citation info

Dataset File Tree

Git Hash: d5dcdd7 

BIDS Validation

We found 1 Warning in your dataset. You are not required to fix warnings, but doing so will make your dataset more BIDS compliant.

/sub-01/func/sub-01_task-sleep_run-1_bold.nii.gz

Task scans should have a corresponding events.tsv file. It can be included one of the following locations: /events.tsv, /task-sleep_events.tsv, /run-1_events.tsv, /task-sleep_run-1_events.tsv, /sub-01/sub-01_events.tsv, /sub-01/sub-01_task-sleep_events.tsv, /sub-01/sub-01_run-1_events.tsv, /sub-01/sub-01_task-sleep_run-1_events.tsv, /sub-01/func/sub-01_events.tsv, /sub-01/func/sub-01_task-sleep_events.tsv, /sub-01/func/sub-01_run-1_events.tsv, /sub-01/func/sub-01_task-sleep_run-1_events.tsv

/sub-01/func/sub-01_task-sleep_run-2_bold.nii.gz

Task scans should have a corresponding events.tsv file. It can be included one of the following locations: /events.tsv, /task-sleep_events.tsv, /run-2_events.tsv, /task-sleep_run-2_events.tsv, /sub-01/sub-01_events.tsv, /sub-01/sub-01_task-sleep_events.tsv, /sub-01/sub-01_run-2_events.tsv, /sub-01/sub-01_task-sleep_run-2_events.tsv, /sub-01/func/sub-01_events.tsv, /sub-01/func/sub-01_task-sleep_events.tsv, /sub-01/func/sub-01_run-2_events.tsv, /sub-01/func/sub-01_task-sleep_run-2_events.tsv

/sub-01/func/sub-01_task-sleep_run-3_bold.nii.gz

Task scans should have a corresponding events.tsv file. It can be included one of the following locations: /events.tsv, /task-sleep_events.tsv, /run-3_events.tsv, /task-sleep_run-3_events.tsv, /sub-01/sub-01_events.tsv, /sub-01/sub-01_task-sleep_events.tsv, /sub-01/sub-01_run-3_events.tsv, /sub-01/sub-01_task-sleep_run-3_events.tsv, /sub-01/func/sub-01_events.tsv, /sub-01/func/sub-01_task-sleep_events.tsv, /sub-01/func/sub-01_run-3_events.tsv, /sub-01/func/sub-01_task-sleep_run-3_events.tsv

/sub-03/func/sub-03_task-sleep_run-1_bold.nii.gz

Task scans should have a corresponding events.tsv file. It can be included one of the following locations: /events.tsv, /task-sleep_events.tsv, /run-1_events.tsv, /task-sleep_run-1_events.tsv, /sub-03/sub-03_events.tsv, /sub-03/sub-03_task-sleep_events.tsv, /sub-03/sub-03_run-1_events.tsv, /sub-03/sub-03_task-sleep_run-1_events.tsv, /sub-03/func/sub-03_events.tsv, /sub-03/func/sub-03_task-sleep_events.tsv, /sub-03/func/sub-03_run-1_events.tsv, /sub-03/func/sub-03_task-sleep_run-1_events.tsv

/sub-03/func/sub-03_task-sleep_run-2_bold.nii.gz

Task scans should have a corresponding events.tsv file. It can be included one of the following locations: /events.tsv, /task-sleep_events.tsv, /run-2_events.tsv, /task-sleep_run-2_events.tsv, /sub-03/sub-03_events.tsv, /sub-03/sub-03_task-sleep_events.tsv, /sub-03/sub-03_run-2_events.tsv, /sub-03/sub-03_task-sleep_run-2_events.tsv, /sub-03/func/sub-03_events.tsv, /sub-03/func/sub-03_task-sleep_events.tsv, /sub-03/func/sub-03_run-2_events.tsv, /sub-03/func/sub-03_task-sleep_run-2_events.tsv

/sub-03/func/sub-03_task-sleep_run-3_bold.nii.gz

Task scans should have a corresponding events.tsv file. It can be included one of the following locations: /events.tsv, /task-sleep_events.tsv, /run-3_events.tsv, /task-sleep_run-3_events.tsv, /sub-03/sub-03_events.tsv, /sub-03/sub-03_task-sleep_events.tsv, /sub-03/sub-03_run-3_events.tsv, /sub-03/sub-03_task-sleep_run-3_events.tsv, /sub-03/func/sub-03_events.tsv, /sub-03/func/sub-03_task-sleep_events.tsv, /sub-03/func/sub-03_run-3_events.tsv, /sub-03/func/sub-03_task-sleep_run-3_events.tsv

/sub-03/func/sub-03_task-sleep_run-4_bold.nii.gz

Task scans should have a corresponding events.tsv file. It can be included one of the following locations: /events.tsv, /task-sleep_events.tsv, /run-4_events.tsv, /task-sleep_run-4_events.tsv, /sub-03/sub-03_events.tsv, /sub-03/sub-03_task-sleep_events.tsv, /sub-03/sub-03_run-4_events.tsv, /sub-03/sub-03_task-sleep_run-4_events.tsv, /sub-03/func/sub-03_events.tsv, /sub-03/func/sub-03_task-sleep_events.tsv, /sub-03/func/sub-03_run-4_events.tsv, /sub-03/func/sub-03_task-sleep_run-4_events.tsv

/sub-03/func/sub-03_task-sleep_run-5_bold.nii.gz

Task scans should have a corresponding events.tsv file. It can be included one of the following locations: /events.tsv, /task-sleep_events.tsv, /run-5_events.tsv, /task-sleep_run-5_events.tsv, /sub-03/sub-03_events.tsv, /sub-03/sub-03_task-sleep_events.tsv, /sub-03/sub-03_run-5_events.tsv, /sub-03/sub-03_task-sleep_run-5_events.tsv, /sub-03/func/sub-03_events.tsv, /sub-03/func/sub-03_task-sleep_events.tsv, /sub-03/func/sub-03_run-5_events.tsv, /sub-03/func/sub-03_task-sleep_run-5_events.tsv

/sub-03/func/sub-03_task-sleep_run-6_bold.nii.gz

Task scans should have a corresponding events.tsv file. It can be included one of the following locations: /events.tsv, /task-sleep_events.tsv, /run-6_events.tsv, /task-sleep_run-6_events.tsv, /sub-03/sub-03_events.tsv, /sub-03/sub-03_task-sleep_events.tsv, /sub-03/sub-03_run-6_events.tsv, /sub-03/sub-03_task-sleep_run-6_events.tsv, /sub-03/func/sub-03_events.tsv, /sub-03/func/sub-03_task-sleep_events.tsv, /sub-03/func/sub-03_run-6_events.tsv, /sub-03/func/sub-03_task-sleep_run-6_events.tsv

/sub-03/func/sub-03_task-sleep_run-7_bold.nii.gz

Task scans should have a corresponding events.tsv file. It can be included one of the following locations: /events.tsv, /task-sleep_events.tsv, /run-7_events.tsv, /task-sleep_run-7_events.tsv, /sub-03/sub-03_events.tsv, /sub-03/sub-03_task-sleep_events.tsv, /sub-03/sub-03_run-7_events.tsv, /sub-03/sub-03_task-sleep_run-7_events.tsv, /sub-03/func/sub-03_events.tsv, /sub-03/func/sub-03_task-sleep_events.tsv, /sub-03/func/sub-03_run-7_events.tsv, /sub-03/func/sub-03_task-sleep_run-7_events.tsv

and 179 more files

Dataset File Tree

Git Hash: d5dcdd7 

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