Conscious-SEEG-Dataset

uploaded by Sen Wan on 2021-08-02 - about 2 months ago
last modified on 2021-08-13 - about 1 month ago
authored by Sen Wan, Feng Bao, Chen Yao, Fengpeng Wang, Bohan Li, Shi Mao, Wendi Yu, Kexin Zhang, Youyong Kong, Xiaobin Zhang, Xiaoping Du, Xiaodong Cai, Lu Fang, Yue Deng, Yi Yao, Qionghai Dai
8633
We found 1 Warning in your dataset. You are not required to fix warnings, but doing so will make your dataset more BIDS compliant.

/participants.tsv

Tabular file contains custom columns not described in a data dictionary

Columns: age, sex not defined, please define in: /participants.json

/sub-0001/ieeg/sub-0001_task-ana2con_events.tsv

Tabular file contains custom columns not described in a data dictionary

Columns: type not defined, please define in: /events.json, /task-ana2con_events.json,/sub-0001/sub-0001_events.json,/sub-0001/sub-0001_task-ana2con_events.json,/sub-0001/ieeg/sub-0001_events.json,/sub-0001/ieeg/sub-0001_task-ana2con_events.json

/sub-0002/ieeg/sub-0002_task-ana2con_events.tsv

Tabular file contains custom columns not described in a data dictionary

Columns: type not defined, please define in: /events.json, /task-ana2con_events.json,/sub-0002/sub-0002_events.json,/sub-0002/sub-0002_task-ana2con_events.json,/sub-0002/ieeg/sub-0002_events.json,/sub-0002/ieeg/sub-0002_task-ana2con_events.json

/sub-0003/ieeg/sub-0003_task-ana2con_events.tsv

Tabular file contains custom columns not described in a data dictionary

Columns: type not defined, please define in: /events.json, /task-ana2con_events.json,/sub-0003/sub-0003_events.json,/sub-0003/sub-0003_task-ana2con_events.json,/sub-0003/ieeg/sub-0003_events.json,/sub-0003/ieeg/sub-0003_task-ana2con_events.json

/sub-0004/ieeg/sub-0004_task-ana2con_events.tsv

Tabular file contains custom columns not described in a data dictionary

Columns: type not defined, please define in: /events.json, /task-ana2con_events.json,/sub-0004/sub-0004_events.json,/sub-0004/sub-0004_task-ana2con_events.json,/sub-0004/ieeg/sub-0004_events.json,/sub-0004/ieeg/sub-0004_task-ana2con_events.json

/sub-0005/ieeg/sub-0005_task-ana2con_events.tsv

Tabular file contains custom columns not described in a data dictionary

Columns: type not defined, please define in: /events.json, /task-ana2con_events.json,/sub-0005/sub-0005_events.json,/sub-0005/sub-0005_task-ana2con_events.json,/sub-0005/ieeg/sub-0005_events.json,/sub-0005/ieeg/sub-0005_task-ana2con_events.json

/sub-0006/ieeg/sub-0006_task-ana2con_events.tsv

Tabular file contains custom columns not described in a data dictionary

Columns: type not defined, please define in: /events.json, /task-ana2con_events.json,/sub-0006/sub-0006_events.json,/sub-0006/sub-0006_task-ana2con_events.json,/sub-0006/ieeg/sub-0006_events.json,/sub-0006/ieeg/sub-0006_task-ana2con_events.json

/sub-0007/ieeg/sub-0007_task-ana2con_events.tsv

Tabular file contains custom columns not described in a data dictionary

Columns: type not defined, please define in: /events.json, /task-ana2con_events.json,/sub-0007/sub-0007_events.json,/sub-0007/sub-0007_task-ana2con_events.json,/sub-0007/ieeg/sub-0007_events.json,/sub-0007/ieeg/sub-0007_task-ana2con_events.json

/sub-0008/ieeg/sub-0008_task-ana2con_events.tsv

Tabular file contains custom columns not described in a data dictionary

Columns: type not defined, please define in: /events.json, /task-ana2con_events.json,/sub-0008/sub-0008_events.json,/sub-0008/sub-0008_task-ana2con_events.json,/sub-0008/ieeg/sub-0008_events.json,/sub-0008/ieeg/sub-0008_task-ana2con_events.json

/sub-0009/ieeg/sub-0009_task-ana2con_events.tsv

Tabular file contains custom columns not described in a data dictionary

Columns: type not defined, please define in: /events.json, /task-ana2con_events.json,/sub-0009/sub-0009_events.json,/sub-0009/sub-0009_task-ana2con_events.json,/sub-0009/ieeg/sub-0009_events.json,/sub-0009/ieeg/sub-0009_task-ana2con_events.json

and 24 more files

OpenNeuro Accession Number: ds003754
Files: 213, Size: 16.57GB, Subjects: 44, Session: 1
Available Tasks: ana2con, con2ana
Available Modalities: iEEG

README

Mapping brain dynamics in anesthesia-induced unconsciousness with a human stereoelectroencephalography resource

Consciousness Study

SEEG is organized in our study with a total of 45 subjects.

For additional clinical metadata about each subject, refer to the clinical Excel table in the publication.

Data Availability ----------------- Xiamen Humanity Hospital agreed to share.

All data were approved to be de-identified and shared. All data in this dataset have no identifiers associated with the patient.

Sourcedata

For each subject, there was a raw EDF file, which was converted into the BrainVision format with FieldTrip.

Each subject also has an 'anat' folder which contains 'anat_t1.nii', 'postop_ct.nii', 'glanat.nii' and 'glpostop_ct.nii'. The first two are origin preoperative MRI and postoperative CT. The latter two are MRI and CT which were registered to the MNI template. Each subject also has 'SEEG_COORDINATE.mat' in 'ieeg' folder. 'SEEG_COORDINATE.mat' contains the coordinates in MNI space of each electrode contact. The corresponding index for AAL atlas was also included.

Subjects used in the article(Mapping brain dynamics in anesthesia-induced unconsciousness with a human stereoelectroencephalography resource) also contain ‘SEEG.mat’, which is the preprocessed data with 0.3~200Hz bandpass filtering and 50Hz notch filtering.

Events and Descriptions ----------------------- Within each EDF file, there contain event markers that are annotated by clinicians, which may inform you of specific clinical events that are occurring in time. The events were labeled for the consciousness state. Labels such as eyes open, spontaneous breathing, swallow, choking cough were regarded as the return of consciousness.

Authors

  • Sen Wan
  • Feng Bao
  • Chen Yao
  • Fengpeng Wang
  • Bohan Li
  • Shi Mao
  • Wendi Yu
  • Kexin Zhang
  • Youyong Kong
  • Xiaobin Zhang
  • Xiaoping Du
  • Xiaodong Cai
  • Lu Fang
  • Yue Deng
  • Yi Yao
  • Qionghai Dai

Dataset DOI

10.18112/openneuro.ds003754.v1.0.1

License

CC0

Acknowledgements

How to Acknowledge

Funding

References and Links

Ethics Approvals

How To Cite

Copy
Sen Wan and Feng Bao and Chen Yao and Fengpeng Wang and Bohan Li and Shi Mao and Wendi Yu and Kexin Zhang and Youyong Kong and Xiaobin Zhang and Xiaoping Du and Xiaodong Cai and Lu Fang and Yue Deng and Yi Yao and Qionghai Dai (2021). Conscious-SEEG-Dataset. OpenNeuro. [Dataset] doi: 10.18112/openneuro.ds003754.v1.0.1
More citation info

Conscious-SEEG-Dataset

uploaded by Sen Wan on 2021-08-02 - about 2 months ago
last modified on 2021-08-13 - about 1 month ago
authored by Sen Wan, Feng Bao, Chen Yao, Fengpeng Wang, Bohan Li, Shi Mao, Wendi Yu, Kexin Zhang, Youyong Kong, Xiaobin Zhang, Xiaoping Du, Xiaodong Cai, Lu Fang, Yue Deng, Yi Yao, Qionghai Dai
8633

OpenNeuro Accession Number: ds003754
Files: 213, Size: 16.57GB, Subjects: 44, Session: 1
Available Tasks: ana2con, con2ana
Available Modalities: iEEG

README

Mapping brain dynamics in anesthesia-induced unconsciousness with a human stereoelectroencephalography resource

Consciousness Study

SEEG is organized in our study with a total of 45 subjects.

For additional clinical metadata about each subject, refer to the clinical Excel table in the publication.

Data Availability ----------------- Xiamen Humanity Hospital agreed to share.

All data were approved to be de-identified and shared. All data in this dataset have no identifiers associated with the patient.

Sourcedata

For each subject, there was a raw EDF file, which was converted into the BrainVision format with FieldTrip.

Each subject also has an 'anat' folder which contains 'anat_t1.nii', 'postop_ct.nii', 'glanat.nii' and 'glpostop_ct.nii'. The first two are origin preoperative MRI and postoperative CT. The latter two are MRI and CT which were registered to the MNI template. Each subject also has 'SEEG_COORDINATE.mat' in 'ieeg' folder. 'SEEG_COORDINATE.mat' contains the coordinates in MNI space of each electrode contact. The corresponding index for AAL atlas was also included.

Subjects used in the article(Mapping brain dynamics in anesthesia-induced unconsciousness with a human stereoelectroencephalography resource) also contain ‘SEEG.mat’, which is the preprocessed data with 0.3~200Hz bandpass filtering and 50Hz notch filtering.

Events and Descriptions ----------------------- Within each EDF file, there contain event markers that are annotated by clinicians, which may inform you of specific clinical events that are occurring in time. The events were labeled for the consciousness state. Labels such as eyes open, spontaneous breathing, swallow, choking cough were regarded as the return of consciousness.

Authors

  • Sen Wan
  • Feng Bao
  • Chen Yao
  • Fengpeng Wang
  • Bohan Li
  • Shi Mao
  • Wendi Yu
  • Kexin Zhang
  • Youyong Kong
  • Xiaobin Zhang
  • Xiaoping Du
  • Xiaodong Cai
  • Lu Fang
  • Yue Deng
  • Yi Yao
  • Qionghai Dai

Dataset DOI

10.18112/openneuro.ds003754.v1.0.1

License

CC0

Acknowledgements

How to Acknowledge

Funding

References and Links

Ethics Approvals

How To Cite

Copy
Sen Wan and Feng Bao and Chen Yao and Fengpeng Wang and Bohan Li and Shi Mao and Wendi Yu and Kexin Zhang and Youyong Kong and Xiaobin Zhang and Xiaoping Du and Xiaodong Cai and Lu Fang and Yue Deng and Yi Yao and Qionghai Dai (2021). Conscious-SEEG-Dataset. OpenNeuro. [Dataset] doi: 10.18112/openneuro.ds003754.v1.0.1
More citation info

Dataset File Tree

Git Hash: eead22c 

BIDS Validation

We found 1 Warning in your dataset. You are not required to fix warnings, but doing so will make your dataset more BIDS compliant.

/participants.tsv

Tabular file contains custom columns not described in a data dictionary

Columns: age, sex not defined, please define in: /participants.json

/sub-0001/ieeg/sub-0001_task-ana2con_events.tsv

Tabular file contains custom columns not described in a data dictionary

Columns: type not defined, please define in: /events.json, /task-ana2con_events.json,/sub-0001/sub-0001_events.json,/sub-0001/sub-0001_task-ana2con_events.json,/sub-0001/ieeg/sub-0001_events.json,/sub-0001/ieeg/sub-0001_task-ana2con_events.json

/sub-0002/ieeg/sub-0002_task-ana2con_events.tsv

Tabular file contains custom columns not described in a data dictionary

Columns: type not defined, please define in: /events.json, /task-ana2con_events.json,/sub-0002/sub-0002_events.json,/sub-0002/sub-0002_task-ana2con_events.json,/sub-0002/ieeg/sub-0002_events.json,/sub-0002/ieeg/sub-0002_task-ana2con_events.json

/sub-0003/ieeg/sub-0003_task-ana2con_events.tsv

Tabular file contains custom columns not described in a data dictionary

Columns: type not defined, please define in: /events.json, /task-ana2con_events.json,/sub-0003/sub-0003_events.json,/sub-0003/sub-0003_task-ana2con_events.json,/sub-0003/ieeg/sub-0003_events.json,/sub-0003/ieeg/sub-0003_task-ana2con_events.json

/sub-0004/ieeg/sub-0004_task-ana2con_events.tsv

Tabular file contains custom columns not described in a data dictionary

Columns: type not defined, please define in: /events.json, /task-ana2con_events.json,/sub-0004/sub-0004_events.json,/sub-0004/sub-0004_task-ana2con_events.json,/sub-0004/ieeg/sub-0004_events.json,/sub-0004/ieeg/sub-0004_task-ana2con_events.json

/sub-0005/ieeg/sub-0005_task-ana2con_events.tsv

Tabular file contains custom columns not described in a data dictionary

Columns: type not defined, please define in: /events.json, /task-ana2con_events.json,/sub-0005/sub-0005_events.json,/sub-0005/sub-0005_task-ana2con_events.json,/sub-0005/ieeg/sub-0005_events.json,/sub-0005/ieeg/sub-0005_task-ana2con_events.json

/sub-0006/ieeg/sub-0006_task-ana2con_events.tsv

Tabular file contains custom columns not described in a data dictionary

Columns: type not defined, please define in: /events.json, /task-ana2con_events.json,/sub-0006/sub-0006_events.json,/sub-0006/sub-0006_task-ana2con_events.json,/sub-0006/ieeg/sub-0006_events.json,/sub-0006/ieeg/sub-0006_task-ana2con_events.json

/sub-0007/ieeg/sub-0007_task-ana2con_events.tsv

Tabular file contains custom columns not described in a data dictionary

Columns: type not defined, please define in: /events.json, /task-ana2con_events.json,/sub-0007/sub-0007_events.json,/sub-0007/sub-0007_task-ana2con_events.json,/sub-0007/ieeg/sub-0007_events.json,/sub-0007/ieeg/sub-0007_task-ana2con_events.json

/sub-0008/ieeg/sub-0008_task-ana2con_events.tsv

Tabular file contains custom columns not described in a data dictionary

Columns: type not defined, please define in: /events.json, /task-ana2con_events.json,/sub-0008/sub-0008_events.json,/sub-0008/sub-0008_task-ana2con_events.json,/sub-0008/ieeg/sub-0008_events.json,/sub-0008/ieeg/sub-0008_task-ana2con_events.json

/sub-0009/ieeg/sub-0009_task-ana2con_events.tsv

Tabular file contains custom columns not described in a data dictionary

Columns: type not defined, please define in: /events.json, /task-ana2con_events.json,/sub-0009/sub-0009_events.json,/sub-0009/sub-0009_task-ana2con_events.json,/sub-0009/ieeg/sub-0009_events.json,/sub-0009/ieeg/sub-0009_task-ana2con_events.json

and 24 more files

Dataset File Tree

Git Hash: eead22c 

Comments

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By wansen1991@gmail.com - about 1 month ago
Initial
By wansen1991@gmail.com - about 1 month ago
Add electrode_info.xlsx for electrode reconstruction