Simultaneous EEG and fMRI signals during sleep from humans

uploaded by yameng gu on 2021-05-21 - 2 months ago
last modified on 2021-05-26 - 2 months ago
authored by Yameng Gu, Feng Han, Lucas E. Sainburg, Xiao Liu
4475761
We found 1 Warning in your dataset. You are not required to fix warnings, but doing so will make your dataset more BIDS compliant.

/sub-01/func/sub-01_task-sleep_run-1_bold.nii.gz

Task scans should have a corresponding events.tsv file. It can be included one of the following locations: /events.tsv, /task-sleep_events.tsv, /run-1_events.tsv, /task-sleep_run-1_events.tsv, /sub-01/sub-01_events.tsv, /sub-01/sub-01_task-sleep_events.tsv, /sub-01/sub-01_run-1_events.tsv, /sub-01/sub-01_task-sleep_run-1_events.tsv, /sub-01/func/sub-01_events.tsv, /sub-01/func/sub-01_task-sleep_events.tsv, /sub-01/func/sub-01_run-1_events.tsv, /sub-01/func/sub-01_task-sleep_run-1_events.tsv

/sub-01/func/sub-01_task-sleep_run-2_bold.nii.gz

Task scans should have a corresponding events.tsv file. It can be included one of the following locations: /events.tsv, /task-sleep_events.tsv, /run-2_events.tsv, /task-sleep_run-2_events.tsv, /sub-01/sub-01_events.tsv, /sub-01/sub-01_task-sleep_events.tsv, /sub-01/sub-01_run-2_events.tsv, /sub-01/sub-01_task-sleep_run-2_events.tsv, /sub-01/func/sub-01_events.tsv, /sub-01/func/sub-01_task-sleep_events.tsv, /sub-01/func/sub-01_run-2_events.tsv, /sub-01/func/sub-01_task-sleep_run-2_events.tsv

/sub-01/func/sub-01_task-sleep_run-3_bold.nii.gz

Task scans should have a corresponding events.tsv file. It can be included one of the following locations: /events.tsv, /task-sleep_events.tsv, /run-3_events.tsv, /task-sleep_run-3_events.tsv, /sub-01/sub-01_events.tsv, /sub-01/sub-01_task-sleep_events.tsv, /sub-01/sub-01_run-3_events.tsv, /sub-01/sub-01_task-sleep_run-3_events.tsv, /sub-01/func/sub-01_events.tsv, /sub-01/func/sub-01_task-sleep_events.tsv, /sub-01/func/sub-01_run-3_events.tsv, /sub-01/func/sub-01_task-sleep_run-3_events.tsv

/sub-03/func/sub-03_task-sleep_run-1_bold.nii.gz

Task scans should have a corresponding events.tsv file. It can be included one of the following locations: /events.tsv, /task-sleep_events.tsv, /run-1_events.tsv, /task-sleep_run-1_events.tsv, /sub-03/sub-03_events.tsv, /sub-03/sub-03_task-sleep_events.tsv, /sub-03/sub-03_run-1_events.tsv, /sub-03/sub-03_task-sleep_run-1_events.tsv, /sub-03/func/sub-03_events.tsv, /sub-03/func/sub-03_task-sleep_events.tsv, /sub-03/func/sub-03_run-1_events.tsv, /sub-03/func/sub-03_task-sleep_run-1_events.tsv

/sub-03/func/sub-03_task-sleep_run-2_bold.nii.gz

Task scans should have a corresponding events.tsv file. It can be included one of the following locations: /events.tsv, /task-sleep_events.tsv, /run-2_events.tsv, /task-sleep_run-2_events.tsv, /sub-03/sub-03_events.tsv, /sub-03/sub-03_task-sleep_events.tsv, /sub-03/sub-03_run-2_events.tsv, /sub-03/sub-03_task-sleep_run-2_events.tsv, /sub-03/func/sub-03_events.tsv, /sub-03/func/sub-03_task-sleep_events.tsv, /sub-03/func/sub-03_run-2_events.tsv, /sub-03/func/sub-03_task-sleep_run-2_events.tsv

/sub-03/func/sub-03_task-sleep_run-3_bold.nii.gz

Task scans should have a corresponding events.tsv file. It can be included one of the following locations: /events.tsv, /task-sleep_events.tsv, /run-3_events.tsv, /task-sleep_run-3_events.tsv, /sub-03/sub-03_events.tsv, /sub-03/sub-03_task-sleep_events.tsv, /sub-03/sub-03_run-3_events.tsv, /sub-03/sub-03_task-sleep_run-3_events.tsv, /sub-03/func/sub-03_events.tsv, /sub-03/func/sub-03_task-sleep_events.tsv, /sub-03/func/sub-03_run-3_events.tsv, /sub-03/func/sub-03_task-sleep_run-3_events.tsv

/sub-03/func/sub-03_task-sleep_run-4_bold.nii.gz

Task scans should have a corresponding events.tsv file. It can be included one of the following locations: /events.tsv, /task-sleep_events.tsv, /run-4_events.tsv, /task-sleep_run-4_events.tsv, /sub-03/sub-03_events.tsv, /sub-03/sub-03_task-sleep_events.tsv, /sub-03/sub-03_run-4_events.tsv, /sub-03/sub-03_task-sleep_run-4_events.tsv, /sub-03/func/sub-03_events.tsv, /sub-03/func/sub-03_task-sleep_events.tsv, /sub-03/func/sub-03_run-4_events.tsv, /sub-03/func/sub-03_task-sleep_run-4_events.tsv

/sub-03/func/sub-03_task-sleep_run-5_bold.nii.gz

Task scans should have a corresponding events.tsv file. It can be included one of the following locations: /events.tsv, /task-sleep_events.tsv, /run-5_events.tsv, /task-sleep_run-5_events.tsv, /sub-03/sub-03_events.tsv, /sub-03/sub-03_task-sleep_events.tsv, /sub-03/sub-03_run-5_events.tsv, /sub-03/sub-03_task-sleep_run-5_events.tsv, /sub-03/func/sub-03_events.tsv, /sub-03/func/sub-03_task-sleep_events.tsv, /sub-03/func/sub-03_run-5_events.tsv, /sub-03/func/sub-03_task-sleep_run-5_events.tsv

/sub-03/func/sub-03_task-sleep_run-6_bold.nii.gz

Task scans should have a corresponding events.tsv file. It can be included one of the following locations: /events.tsv, /task-sleep_events.tsv, /run-6_events.tsv, /task-sleep_run-6_events.tsv, /sub-03/sub-03_events.tsv, /sub-03/sub-03_task-sleep_events.tsv, /sub-03/sub-03_run-6_events.tsv, /sub-03/sub-03_task-sleep_run-6_events.tsv, /sub-03/func/sub-03_events.tsv, /sub-03/func/sub-03_task-sleep_events.tsv, /sub-03/func/sub-03_run-6_events.tsv, /sub-03/func/sub-03_task-sleep_run-6_events.tsv

/sub-03/func/sub-03_task-sleep_run-7_bold.nii.gz

Task scans should have a corresponding events.tsv file. It can be included one of the following locations: /events.tsv, /task-sleep_events.tsv, /run-7_events.tsv, /task-sleep_run-7_events.tsv, /sub-03/sub-03_events.tsv, /sub-03/sub-03_task-sleep_events.tsv, /sub-03/sub-03_run-7_events.tsv, /sub-03/sub-03_task-sleep_run-7_events.tsv, /sub-03/func/sub-03_events.tsv, /sub-03/func/sub-03_task-sleep_events.tsv, /sub-03/func/sub-03_run-7_events.tsv, /sub-03/func/sub-03_task-sleep_run-7_events.tsv

and 163 more files

OpenNeuro Accession Number: ds003658
Files: 1240, Size: 80.06GB, Subjects: 31, Session: 1
Available Tasks: rest, sleep
Available Modalities: EEG, MRI

README

This dataset included 33 healthy participants collected at Penn State with informed consent. Simultaneously collected EEG and BOLD signals for each participant were recorded and organized at each folder. EEG data were collected using a 32 channel MR-compatible EEG system (Brain Products, Munich, Germany). R128 in the EEG signals is the BOLD fMRI volume trigger. Each scanning section consisted of an anatomical session, two 10-min resting-state sessions, and several 15-min sleep sessions. The first resting-state session was conducted before a visual-motor adaptation task and the second one was conducted after a visual-motor adaptation task. During the visual-motor adaptation task, participants were instructed to move a cursor to arrive at the target as fast as possible (Albouy et al, Journal of Sleep Research, 2013). The sleep stages for these 33 subjects were organized into a spreedsheet and can be found at this website: https://github.com/YamengGu/EEG-fMRI-sleep. For more information or any questions about this dataset, please see the manuscript on bioRxiv or contact Yameng Gu (ymgu95@gmail.com)

Authors

  • Yameng Gu
  • Feng Han
  • Lucas E. Sainburg
  • Xiao Liu

Dataset DOI

10.18112/openneuro.ds003658.v1.0.0

License

CC0

Acknowledgements

We would like to express special thanks to Dr. Thomas Beck and Dr. Josef Pfeuffer, Siemens AG, Healthcare Sector for providing us with the Advanced fMRI package WIP package. Data analysis were conducted using the computing resources provided by the Institute for Computational and Data Sciences at the Pennsylvania State University (https://icds.psu.edu).

How to Acknowledge

Please cite the paper

Funding

  • National Institutes of Health Pathway to Independence Award K99/R00 (5R00NS092996-03)
  • Brain Initiative Award (1RF1MH123247-01)
  • National Institutes of Health R01 Award (1R01NS113889-01A1)

References and Links

  • An orderly sequence of autonomic and neural events during arousal state changes, Yameng Gu, Feng Han, Lucas E. Sainburg, Xiao Liu, Biorxiv, 2021

Ethics Approvals

How To Cite

Copy
Yameng Gu and Feng Han and Lucas E. Sainburg and Xiao Liu (2021). Simultaneous EEG and fMRI signals during sleep from humans. OpenNeuro. [Dataset] doi: 10.18112/openneuro.ds003658.v1.0.0
More citation info

Simultaneous EEG and fMRI signals during sleep from humans

uploaded by yameng gu on 2021-05-21 - 2 months ago
last modified on 2021-05-26 - 2 months ago
authored by Yameng Gu, Feng Han, Lucas E. Sainburg, Xiao Liu
4475761

OpenNeuro Accession Number: ds003658
Files: 1240, Size: 80.06GB, Subjects: 31, Session: 1
Available Tasks: rest, sleep
Available Modalities: EEG, MRI

README

This dataset included 33 healthy participants collected at Penn State with informed consent. Simultaneously collected EEG and BOLD signals for each participant were recorded and organized at each folder. EEG data were collected using a 32 channel MR-compatible EEG system (Brain Products, Munich, Germany). R128 in the EEG signals is the BOLD fMRI volume trigger. Each scanning section consisted of an anatomical session, two 10-min resting-state sessions, and several 15-min sleep sessions. The first resting-state session was conducted before a visual-motor adaptation task and the second one was conducted after a visual-motor adaptation task. During the visual-motor adaptation task, participants were instructed to move a cursor to arrive at the target as fast as possible (Albouy et al, Journal of Sleep Research, 2013). The sleep stages for these 33 subjects were organized into a spreedsheet and can be found at this website: https://github.com/YamengGu/EEG-fMRI-sleep. For more information or any questions about this dataset, please see the manuscript on bioRxiv or contact Yameng Gu (ymgu95@gmail.com)

Authors

  • Yameng Gu
  • Feng Han
  • Lucas E. Sainburg
  • Xiao Liu

Dataset DOI

10.18112/openneuro.ds003658.v1.0.0

License

CC0

Acknowledgements

We would like to express special thanks to Dr. Thomas Beck and Dr. Josef Pfeuffer, Siemens AG, Healthcare Sector for providing us with the Advanced fMRI package WIP package. Data analysis were conducted using the computing resources provided by the Institute for Computational and Data Sciences at the Pennsylvania State University (https://icds.psu.edu).

How to Acknowledge

Please cite the paper

Funding

  • National Institutes of Health Pathway to Independence Award K99/R00 (5R00NS092996-03)
  • Brain Initiative Award (1RF1MH123247-01)
  • National Institutes of Health R01 Award (1R01NS113889-01A1)

References and Links

  • An orderly sequence of autonomic and neural events during arousal state changes, Yameng Gu, Feng Han, Lucas E. Sainburg, Xiao Liu, Biorxiv, 2021

Ethics Approvals

How To Cite

Copy
Yameng Gu and Feng Han and Lucas E. Sainburg and Xiao Liu (2021). Simultaneous EEG and fMRI signals during sleep from humans. OpenNeuro. [Dataset] doi: 10.18112/openneuro.ds003658.v1.0.0
More citation info

Dataset File Tree

Git Hash: 70f7547 

BIDS Validation

We found 1 Warning in your dataset. You are not required to fix warnings, but doing so will make your dataset more BIDS compliant.

/sub-01/func/sub-01_task-sleep_run-1_bold.nii.gz

Task scans should have a corresponding events.tsv file. It can be included one of the following locations: /events.tsv, /task-sleep_events.tsv, /run-1_events.tsv, /task-sleep_run-1_events.tsv, /sub-01/sub-01_events.tsv, /sub-01/sub-01_task-sleep_events.tsv, /sub-01/sub-01_run-1_events.tsv, /sub-01/sub-01_task-sleep_run-1_events.tsv, /sub-01/func/sub-01_events.tsv, /sub-01/func/sub-01_task-sleep_events.tsv, /sub-01/func/sub-01_run-1_events.tsv, /sub-01/func/sub-01_task-sleep_run-1_events.tsv

/sub-01/func/sub-01_task-sleep_run-2_bold.nii.gz

Task scans should have a corresponding events.tsv file. It can be included one of the following locations: /events.tsv, /task-sleep_events.tsv, /run-2_events.tsv, /task-sleep_run-2_events.tsv, /sub-01/sub-01_events.tsv, /sub-01/sub-01_task-sleep_events.tsv, /sub-01/sub-01_run-2_events.tsv, /sub-01/sub-01_task-sleep_run-2_events.tsv, /sub-01/func/sub-01_events.tsv, /sub-01/func/sub-01_task-sleep_events.tsv, /sub-01/func/sub-01_run-2_events.tsv, /sub-01/func/sub-01_task-sleep_run-2_events.tsv

/sub-01/func/sub-01_task-sleep_run-3_bold.nii.gz

Task scans should have a corresponding events.tsv file. It can be included one of the following locations: /events.tsv, /task-sleep_events.tsv, /run-3_events.tsv, /task-sleep_run-3_events.tsv, /sub-01/sub-01_events.tsv, /sub-01/sub-01_task-sleep_events.tsv, /sub-01/sub-01_run-3_events.tsv, /sub-01/sub-01_task-sleep_run-3_events.tsv, /sub-01/func/sub-01_events.tsv, /sub-01/func/sub-01_task-sleep_events.tsv, /sub-01/func/sub-01_run-3_events.tsv, /sub-01/func/sub-01_task-sleep_run-3_events.tsv

/sub-03/func/sub-03_task-sleep_run-1_bold.nii.gz

Task scans should have a corresponding events.tsv file. It can be included one of the following locations: /events.tsv, /task-sleep_events.tsv, /run-1_events.tsv, /task-sleep_run-1_events.tsv, /sub-03/sub-03_events.tsv, /sub-03/sub-03_task-sleep_events.tsv, /sub-03/sub-03_run-1_events.tsv, /sub-03/sub-03_task-sleep_run-1_events.tsv, /sub-03/func/sub-03_events.tsv, /sub-03/func/sub-03_task-sleep_events.tsv, /sub-03/func/sub-03_run-1_events.tsv, /sub-03/func/sub-03_task-sleep_run-1_events.tsv

/sub-03/func/sub-03_task-sleep_run-2_bold.nii.gz

Task scans should have a corresponding events.tsv file. It can be included one of the following locations: /events.tsv, /task-sleep_events.tsv, /run-2_events.tsv, /task-sleep_run-2_events.tsv, /sub-03/sub-03_events.tsv, /sub-03/sub-03_task-sleep_events.tsv, /sub-03/sub-03_run-2_events.tsv, /sub-03/sub-03_task-sleep_run-2_events.tsv, /sub-03/func/sub-03_events.tsv, /sub-03/func/sub-03_task-sleep_events.tsv, /sub-03/func/sub-03_run-2_events.tsv, /sub-03/func/sub-03_task-sleep_run-2_events.tsv

/sub-03/func/sub-03_task-sleep_run-3_bold.nii.gz

Task scans should have a corresponding events.tsv file. It can be included one of the following locations: /events.tsv, /task-sleep_events.tsv, /run-3_events.tsv, /task-sleep_run-3_events.tsv, /sub-03/sub-03_events.tsv, /sub-03/sub-03_task-sleep_events.tsv, /sub-03/sub-03_run-3_events.tsv, /sub-03/sub-03_task-sleep_run-3_events.tsv, /sub-03/func/sub-03_events.tsv, /sub-03/func/sub-03_task-sleep_events.tsv, /sub-03/func/sub-03_run-3_events.tsv, /sub-03/func/sub-03_task-sleep_run-3_events.tsv

/sub-03/func/sub-03_task-sleep_run-4_bold.nii.gz

Task scans should have a corresponding events.tsv file. It can be included one of the following locations: /events.tsv, /task-sleep_events.tsv, /run-4_events.tsv, /task-sleep_run-4_events.tsv, /sub-03/sub-03_events.tsv, /sub-03/sub-03_task-sleep_events.tsv, /sub-03/sub-03_run-4_events.tsv, /sub-03/sub-03_task-sleep_run-4_events.tsv, /sub-03/func/sub-03_events.tsv, /sub-03/func/sub-03_task-sleep_events.tsv, /sub-03/func/sub-03_run-4_events.tsv, /sub-03/func/sub-03_task-sleep_run-4_events.tsv

/sub-03/func/sub-03_task-sleep_run-5_bold.nii.gz

Task scans should have a corresponding events.tsv file. It can be included one of the following locations: /events.tsv, /task-sleep_events.tsv, /run-5_events.tsv, /task-sleep_run-5_events.tsv, /sub-03/sub-03_events.tsv, /sub-03/sub-03_task-sleep_events.tsv, /sub-03/sub-03_run-5_events.tsv, /sub-03/sub-03_task-sleep_run-5_events.tsv, /sub-03/func/sub-03_events.tsv, /sub-03/func/sub-03_task-sleep_events.tsv, /sub-03/func/sub-03_run-5_events.tsv, /sub-03/func/sub-03_task-sleep_run-5_events.tsv

/sub-03/func/sub-03_task-sleep_run-6_bold.nii.gz

Task scans should have a corresponding events.tsv file. It can be included one of the following locations: /events.tsv, /task-sleep_events.tsv, /run-6_events.tsv, /task-sleep_run-6_events.tsv, /sub-03/sub-03_events.tsv, /sub-03/sub-03_task-sleep_events.tsv, /sub-03/sub-03_run-6_events.tsv, /sub-03/sub-03_task-sleep_run-6_events.tsv, /sub-03/func/sub-03_events.tsv, /sub-03/func/sub-03_task-sleep_events.tsv, /sub-03/func/sub-03_run-6_events.tsv, /sub-03/func/sub-03_task-sleep_run-6_events.tsv

/sub-03/func/sub-03_task-sleep_run-7_bold.nii.gz

Task scans should have a corresponding events.tsv file. It can be included one of the following locations: /events.tsv, /task-sleep_events.tsv, /run-7_events.tsv, /task-sleep_run-7_events.tsv, /sub-03/sub-03_events.tsv, /sub-03/sub-03_task-sleep_events.tsv, /sub-03/sub-03_run-7_events.tsv, /sub-03/sub-03_task-sleep_run-7_events.tsv, /sub-03/func/sub-03_events.tsv, /sub-03/func/sub-03_task-sleep_events.tsv, /sub-03/func/sub-03_run-7_events.tsv, /sub-03/func/sub-03_task-sleep_run-7_events.tsv

and 163 more files

Dataset File Tree

Git Hash: 70f7547 

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