Deciphering the scopolamine rat model by preclinical functional MRI

uploaded by Dávid Hlatky on 2021-05-06 - about 1 month ago
last modified on 2021-05-06 - about 1 month ago
authored by David Hlatky, Gergely Somogyi
11534003
We found 2 Warnings in your dataset. You are not required to fix warnings, but doing so will make your dataset more BIDS compliant.

/sub-01/ses-01/func/sub-01_ses-01_task-rest_acq-SEEPI_run-01_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-rest_bold.json, /task-rest_acq-SEEPI_bold.json, /task-rest_run-01_bold.json, /task-rest_acq-SEEPI_run-01_bold.json, /sub-01/sub-01_task-rest_bold.json, /sub-01/sub-01_task-rest_acq-SEEPI_bold.json, /sub-01/sub-01_task-rest_run-01_bold.json, /sub-01/sub-01_task-rest_acq-SEEPI_run-01_bold.json, /sub-01/ses-01/sub-01_ses-01_task-rest_bold.json, /sub-01/ses-01/sub-01_ses-01_task-rest_acq-SEEPI_bold.json, /sub-01/ses-01/sub-01_ses-01_task-rest_run-01_bold.json, /sub-01/ses-01/sub-01_ses-01_task-rest_acq-SEEPI_run-01_bold.json, /sub-01/ses-01/func/sub-01_ses-01_task-rest_bold.json, /sub-01/ses-01/func/sub-01_ses-01_task-rest_acq-SEEPI_bold.json, /sub-01/ses-01/func/sub-01_ses-01_task-rest_run-01_bold.json, /sub-01/ses-01/func/sub-01_ses-01_task-rest_acq-SEEPI_run-01_bold.json

/sub-01/ses-01/func/sub-01_ses-01_task-whiskerasl_acq-ASL_run-01_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-whiskerasl_bold.json, /task-whiskerasl_acq-ASL_bold.json, /task-whiskerasl_run-01_bold.json, /task-whiskerasl_acq-ASL_run-01_bold.json, /sub-01/sub-01_task-whiskerasl_bold.json, /sub-01/sub-01_task-whiskerasl_acq-ASL_bold.json, /sub-01/sub-01_task-whiskerasl_run-01_bold.json, /sub-01/sub-01_task-whiskerasl_acq-ASL_run-01_bold.json, /sub-01/ses-01/sub-01_ses-01_task-whiskerasl_bold.json, /sub-01/ses-01/sub-01_ses-01_task-whiskerasl_acq-ASL_bold.json, /sub-01/ses-01/sub-01_ses-01_task-whiskerasl_run-01_bold.json, /sub-01/ses-01/sub-01_ses-01_task-whiskerasl_acq-ASL_run-01_bold.json, /sub-01/ses-01/func/sub-01_ses-01_task-whiskerasl_bold.json, /sub-01/ses-01/func/sub-01_ses-01_task-whiskerasl_acq-ASL_bold.json, /sub-01/ses-01/func/sub-01_ses-01_task-whiskerasl_run-01_bold.json, /sub-01/ses-01/func/sub-01_ses-01_task-whiskerasl_acq-ASL_run-01_bold.json

/sub-01/ses-01/func/sub-01_ses-01_task-whiskerasl_acq-ASL_run-02_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-whiskerasl_bold.json, /task-whiskerasl_acq-ASL_bold.json, /task-whiskerasl_run-02_bold.json, /task-whiskerasl_acq-ASL_run-02_bold.json, /sub-01/sub-01_task-whiskerasl_bold.json, /sub-01/sub-01_task-whiskerasl_acq-ASL_bold.json, /sub-01/sub-01_task-whiskerasl_run-02_bold.json, /sub-01/sub-01_task-whiskerasl_acq-ASL_run-02_bold.json, /sub-01/ses-01/sub-01_ses-01_task-whiskerasl_bold.json, /sub-01/ses-01/sub-01_ses-01_task-whiskerasl_acq-ASL_bold.json, /sub-01/ses-01/sub-01_ses-01_task-whiskerasl_run-02_bold.json, /sub-01/ses-01/sub-01_ses-01_task-whiskerasl_acq-ASL_run-02_bold.json, /sub-01/ses-01/func/sub-01_ses-01_task-whiskerasl_bold.json, /sub-01/ses-01/func/sub-01_ses-01_task-whiskerasl_acq-ASL_bold.json, /sub-01/ses-01/func/sub-01_ses-01_task-whiskerasl_run-02_bold.json, /sub-01/ses-01/func/sub-01_ses-01_task-whiskerasl_acq-ASL_run-02_bold.json

/sub-01/ses-01/func/sub-01_ses-01_task-whiskerepi_acq-GEEPI_run-01_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-whiskerepi_bold.json, /task-whiskerepi_acq-GEEPI_bold.json, /task-whiskerepi_run-01_bold.json, /task-whiskerepi_acq-GEEPI_run-01_bold.json, /sub-01/sub-01_task-whiskerepi_bold.json, /sub-01/sub-01_task-whiskerepi_acq-GEEPI_bold.json, /sub-01/sub-01_task-whiskerepi_run-01_bold.json, /sub-01/sub-01_task-whiskerepi_acq-GEEPI_run-01_bold.json, /sub-01/ses-01/sub-01_ses-01_task-whiskerepi_bold.json, /sub-01/ses-01/sub-01_ses-01_task-whiskerepi_acq-GEEPI_bold.json, /sub-01/ses-01/sub-01_ses-01_task-whiskerepi_run-01_bold.json, /sub-01/ses-01/sub-01_ses-01_task-whiskerepi_acq-GEEPI_run-01_bold.json, /sub-01/ses-01/func/sub-01_ses-01_task-whiskerepi_bold.json, /sub-01/ses-01/func/sub-01_ses-01_task-whiskerepi_acq-GEEPI_bold.json, /sub-01/ses-01/func/sub-01_ses-01_task-whiskerepi_run-01_bold.json, /sub-01/ses-01/func/sub-01_ses-01_task-whiskerepi_acq-GEEPI_run-01_bold.json

/sub-01/ses-02/func/sub-01_ses-02_task-rest_acq-SEEPI_run-01_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-rest_bold.json, /task-rest_acq-SEEPI_bold.json, /task-rest_run-01_bold.json, /task-rest_acq-SEEPI_run-01_bold.json, /sub-01/sub-01_task-rest_bold.json, /sub-01/sub-01_task-rest_acq-SEEPI_bold.json, /sub-01/sub-01_task-rest_run-01_bold.json, /sub-01/sub-01_task-rest_acq-SEEPI_run-01_bold.json, /sub-01/ses-02/sub-01_ses-02_task-rest_bold.json, /sub-01/ses-02/sub-01_ses-02_task-rest_acq-SEEPI_bold.json, /sub-01/ses-02/sub-01_ses-02_task-rest_run-01_bold.json, /sub-01/ses-02/sub-01_ses-02_task-rest_acq-SEEPI_run-01_bold.json, /sub-01/ses-02/func/sub-01_ses-02_task-rest_bold.json, /sub-01/ses-02/func/sub-01_ses-02_task-rest_acq-SEEPI_bold.json, /sub-01/ses-02/func/sub-01_ses-02_task-rest_run-01_bold.json, /sub-01/ses-02/func/sub-01_ses-02_task-rest_acq-SEEPI_run-01_bold.json

/sub-01/ses-02/func/sub-01_ses-02_task-whiskerasl_acq-ASL_run-01_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-whiskerasl_bold.json, /task-whiskerasl_acq-ASL_bold.json, /task-whiskerasl_run-01_bold.json, /task-whiskerasl_acq-ASL_run-01_bold.json, /sub-01/sub-01_task-whiskerasl_bold.json, /sub-01/sub-01_task-whiskerasl_acq-ASL_bold.json, /sub-01/sub-01_task-whiskerasl_run-01_bold.json, /sub-01/sub-01_task-whiskerasl_acq-ASL_run-01_bold.json, /sub-01/ses-02/sub-01_ses-02_task-whiskerasl_bold.json, /sub-01/ses-02/sub-01_ses-02_task-whiskerasl_acq-ASL_bold.json, /sub-01/ses-02/sub-01_ses-02_task-whiskerasl_run-01_bold.json, /sub-01/ses-02/sub-01_ses-02_task-whiskerasl_acq-ASL_run-01_bold.json, /sub-01/ses-02/func/sub-01_ses-02_task-whiskerasl_bold.json, /sub-01/ses-02/func/sub-01_ses-02_task-whiskerasl_acq-ASL_bold.json, /sub-01/ses-02/func/sub-01_ses-02_task-whiskerasl_run-01_bold.json, /sub-01/ses-02/func/sub-01_ses-02_task-whiskerasl_acq-ASL_run-01_bold.json

/sub-01/ses-02/func/sub-01_ses-02_task-whiskerasl_acq-ASL_run-02_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-whiskerasl_bold.json, /task-whiskerasl_acq-ASL_bold.json, /task-whiskerasl_run-02_bold.json, /task-whiskerasl_acq-ASL_run-02_bold.json, /sub-01/sub-01_task-whiskerasl_bold.json, /sub-01/sub-01_task-whiskerasl_acq-ASL_bold.json, /sub-01/sub-01_task-whiskerasl_run-02_bold.json, /sub-01/sub-01_task-whiskerasl_acq-ASL_run-02_bold.json, /sub-01/ses-02/sub-01_ses-02_task-whiskerasl_bold.json, /sub-01/ses-02/sub-01_ses-02_task-whiskerasl_acq-ASL_bold.json, /sub-01/ses-02/sub-01_ses-02_task-whiskerasl_run-02_bold.json, /sub-01/ses-02/sub-01_ses-02_task-whiskerasl_acq-ASL_run-02_bold.json, /sub-01/ses-02/func/sub-01_ses-02_task-whiskerasl_bold.json, /sub-01/ses-02/func/sub-01_ses-02_task-whiskerasl_acq-ASL_bold.json, /sub-01/ses-02/func/sub-01_ses-02_task-whiskerasl_run-02_bold.json, /sub-01/ses-02/func/sub-01_ses-02_task-whiskerasl_acq-ASL_run-02_bold.json

/sub-01/ses-02/func/sub-01_ses-02_task-whiskerepi_acq-GEEPI_run-01_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-whiskerepi_bold.json, /task-whiskerepi_acq-GEEPI_bold.json, /task-whiskerepi_run-01_bold.json, /task-whiskerepi_acq-GEEPI_run-01_bold.json, /sub-01/sub-01_task-whiskerepi_bold.json, /sub-01/sub-01_task-whiskerepi_acq-GEEPI_bold.json, /sub-01/sub-01_task-whiskerepi_run-01_bold.json, /sub-01/sub-01_task-whiskerepi_acq-GEEPI_run-01_bold.json, /sub-01/ses-02/sub-01_ses-02_task-whiskerepi_bold.json, /sub-01/ses-02/sub-01_ses-02_task-whiskerepi_acq-GEEPI_bold.json, /sub-01/ses-02/sub-01_ses-02_task-whiskerepi_run-01_bold.json, /sub-01/ses-02/sub-01_ses-02_task-whiskerepi_acq-GEEPI_run-01_bold.json, /sub-01/ses-02/func/sub-01_ses-02_task-whiskerepi_bold.json, /sub-01/ses-02/func/sub-01_ses-02_task-whiskerepi_acq-GEEPI_bold.json, /sub-01/ses-02/func/sub-01_ses-02_task-whiskerepi_run-01_bold.json, /sub-01/ses-02/func/sub-01_ses-02_task-whiskerepi_acq-GEEPI_run-01_bold.json

/sub-01/ses-03/func/sub-01_ses-03_task-rest_acq-SEEPI_run-01_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-rest_bold.json, /task-rest_acq-SEEPI_bold.json, /task-rest_run-01_bold.json, /task-rest_acq-SEEPI_run-01_bold.json, /sub-01/sub-01_task-rest_bold.json, /sub-01/sub-01_task-rest_acq-SEEPI_bold.json, /sub-01/sub-01_task-rest_run-01_bold.json, /sub-01/sub-01_task-rest_acq-SEEPI_run-01_bold.json, /sub-01/ses-03/sub-01_ses-03_task-rest_bold.json, /sub-01/ses-03/sub-01_ses-03_task-rest_acq-SEEPI_bold.json, /sub-01/ses-03/sub-01_ses-03_task-rest_run-01_bold.json, /sub-01/ses-03/sub-01_ses-03_task-rest_acq-SEEPI_run-01_bold.json, /sub-01/ses-03/func/sub-01_ses-03_task-rest_bold.json, /sub-01/ses-03/func/sub-01_ses-03_task-rest_acq-SEEPI_bold.json, /sub-01/ses-03/func/sub-01_ses-03_task-rest_run-01_bold.json, /sub-01/ses-03/func/sub-01_ses-03_task-rest_acq-SEEPI_run-01_bold.json

/sub-01/ses-03/func/sub-01_ses-03_task-whiskerasl_acq-ASL_run-01_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-whiskerasl_bold.json, /task-whiskerasl_acq-ASL_bold.json, /task-whiskerasl_run-01_bold.json, /task-whiskerasl_acq-ASL_run-01_bold.json, /sub-01/sub-01_task-whiskerasl_bold.json, /sub-01/sub-01_task-whiskerasl_acq-ASL_bold.json, /sub-01/sub-01_task-whiskerasl_run-01_bold.json, /sub-01/sub-01_task-whiskerasl_acq-ASL_run-01_bold.json, /sub-01/ses-03/sub-01_ses-03_task-whiskerasl_bold.json, /sub-01/ses-03/sub-01_ses-03_task-whiskerasl_acq-ASL_bold.json, /sub-01/ses-03/sub-01_ses-03_task-whiskerasl_run-01_bold.json, /sub-01/ses-03/sub-01_ses-03_task-whiskerasl_acq-ASL_run-01_bold.json, /sub-01/ses-03/func/sub-01_ses-03_task-whiskerasl_bold.json, /sub-01/ses-03/func/sub-01_ses-03_task-whiskerasl_acq-ASL_bold.json, /sub-01/ses-03/func/sub-01_ses-03_task-whiskerasl_run-01_bold.json, /sub-01/ses-03/func/sub-01_ses-03_task-whiskerasl_acq-ASL_run-01_bold.json

and 328 more files

/sub-19/ses-02/anat/sub-19_ses-02_acq-GEMS_PD.nii.gz

The most common set of dimensions is: 256,256,36,1 (voxels), This file has the dimensions: 192,192,15,1 (voxels). The most common resolution is: 0.12mm x 0.12mm x 0.50mm x 0.50s, This file has the resolution: 0.11mm x 0.11mm x 2.00mm x 0.30s.

/sub-19/ses-03/anat/sub-19_ses-03_acq-GEMS_PD.nii.gz

The most common set of dimensions is: 256,256,36,1 (voxels), This file has the dimensions: 192,192,15,1 (voxels). The most common resolution is: 0.12mm x 0.12mm x 0.50mm x 0.50s, This file has the resolution: 0.11mm x 0.11mm x 2.00mm x 0.30s.

/sub-20/ses-02/anat/sub-20_ses-02_acq-GEMS_PD.nii.gz

The most common set of dimensions is: 256,256,36,1 (voxels), This file has the dimensions: 192,192,15,1 (voxels). The most common resolution is: 0.12mm x 0.12mm x 0.50mm x 0.50s, This file has the resolution: 0.11mm x 0.11mm x 2.00mm x 0.30s.

/sub-20/ses-03/anat/sub-20_ses-03_acq-GEMS_PD.nii.gz

The most common set of dimensions is: 256,256,36,1 (voxels), This file has the dimensions: 192,192,15,1 (voxels). The most common resolution is: 0.12mm x 0.12mm x 0.50mm x 0.50s, This file has the resolution: 0.11mm x 0.11mm x 2.00mm x 0.30s.

/sub-21/ses-02/anat/sub-21_ses-02_acq-GEMS_PD.nii.gz

The most common set of dimensions is: 256,256,36,1 (voxels), This file has the dimensions: 192,192,15,1 (voxels). The most common resolution is: 0.12mm x 0.12mm x 0.50mm x 0.50s, This file has the resolution: 0.11mm x 0.11mm x 2.00mm x 0.30s.

/sub-21/ses-03/anat/sub-21_ses-03_acq-GEMS_PD.nii.gz

The most common set of dimensions is: 256,256,36,1 (voxels), This file has the dimensions: 192,192,15,1 (voxels). The most common resolution is: 0.12mm x 0.12mm x 0.50mm x 0.50s, This file has the resolution: 0.11mm x 0.11mm x 2.00mm x 0.30s.

/sub-21/ses-04/anat/sub-21_ses-04_acq-GEMS_PD.nii.gz

The most common set of dimensions is: 256,256,36,1 (voxels), This file has the dimensions: 192,192,15,1 (voxels). The most common resolution is: 0.12mm x 0.12mm x 0.50mm x 0.50s, This file has the resolution: 0.11mm x 0.11mm x 2.00mm x 0.30s.

/sub-22/ses-02/anat/sub-22_ses-02_acq-GEMS_PD.nii.gz

The most common set of dimensions is: 256,256,36,1 (voxels), This file has the dimensions: 192,192,15,1 (voxels). The most common resolution is: 0.12mm x 0.12mm x 0.50mm x 0.50s, This file has the resolution: 0.11mm x 0.11mm x 2.00mm x 0.30s.

/sub-22/ses-03/anat/sub-22_ses-03_acq-GEMS_PD.nii.gz

The most common set of dimensions is: 256,256,36,1 (voxels), This file has the dimensions: 192,192,15,1 (voxels). The most common resolution is: 0.12mm x 0.12mm x 0.50mm x 0.50s, This file has the resolution: 0.11mm x 0.11mm x 2.00mm x 0.30s.

/sub-23/ses-02/anat/sub-23_ses-02_acq-GEMS_PD.nii.gz

The most common set of dimensions is: 256,256,36,1 (voxels), This file has the dimensions: 192,192,15,1 (voxels). The most common resolution is: 0.12mm x 0.12mm x 0.50mm x 0.50s, This file has the resolution: 0.11mm x 0.11mm x 2.00mm x 0.30s.

and 28 more files

OpenNeuro Accession Number: ds003647
Files: 1021, Size: 10.83GB, Subjects: 34, Sessions: 4
Available Tasks: rest, whiskerasl, whiskerepi
Available Modalities: T2w, PD, bold

README

This dataset contains reconstructed, unprocessed MRI data accompanying the paper titled "Deciphering the scopolamine challenge rat model by preclinical functional MRI". Experiment 1 was conducted on subjects 1-18, and experiment 2 on subjects 19-34. Each rat underwent multiple sessions (3 and 4 sessions in experiment 1 and 2 respectively) and were pretreated with either i.p. scopolamine, butylscopolamine, donepezil (only in experiment 2), or saline buffer in a randomized cross-over design. They were anesthetised in either isoflurane or in a combination of isoflurane and i.p. medetomidine. For functional assessment, whisker stimulation was used with an air puff aimed at the right whisker pad. Functional scans were acquired with either gradient echo EPI, spin echo EPI or multislice FAIR-ASL. Resting state scans were also acquired but are not discussed in the paper. While we publish this dataset as one BIDS project, it is recommended to slice this dataset into 2 BIDS compatible datasets and handle the 2 experiments separetely during processing, as there are substantial differences (eg.: number of sessions, sequences).

Authors

  • David Hlatky
  • Gergely Somogyi

Dataset DOI

10.18112/openneuro.ds003647.v1.0.0

License

CC0

Acknowledgements

How to Acknowledge

Funding

Ethics Approvals

How To Cite

Copy
David Hlatky and Gergely Somogyi (2021). Deciphering the scopolamine rat model by preclinical functional MRI. OpenNeuro. [Dataset] doi: 10.18112/openneuro.ds003647.v1.0.0
More citation info

Deciphering the scopolamine rat model by preclinical functional MRI

uploaded by Dávid Hlatky on 2021-05-06 - about 1 month ago
last modified on 2021-05-06 - about 1 month ago
authored by David Hlatky, Gergely Somogyi
11534003

OpenNeuro Accession Number: ds003647
Files: 1021, Size: 10.83GB, Subjects: 34, Sessions: 4
Available Tasks: rest, whiskerasl, whiskerepi
Available Modalities: T2w, PD, bold

README

This dataset contains reconstructed, unprocessed MRI data accompanying the paper titled "Deciphering the scopolamine challenge rat model by preclinical functional MRI". Experiment 1 was conducted on subjects 1-18, and experiment 2 on subjects 19-34. Each rat underwent multiple sessions (3 and 4 sessions in experiment 1 and 2 respectively) and were pretreated with either i.p. scopolamine, butylscopolamine, donepezil (only in experiment 2), or saline buffer in a randomized cross-over design. They were anesthetised in either isoflurane or in a combination of isoflurane and i.p. medetomidine. For functional assessment, whisker stimulation was used with an air puff aimed at the right whisker pad. Functional scans were acquired with either gradient echo EPI, spin echo EPI or multislice FAIR-ASL. Resting state scans were also acquired but are not discussed in the paper. While we publish this dataset as one BIDS project, it is recommended to slice this dataset into 2 BIDS compatible datasets and handle the 2 experiments separetely during processing, as there are substantial differences (eg.: number of sessions, sequences).

Authors

  • David Hlatky
  • Gergely Somogyi

Dataset DOI

10.18112/openneuro.ds003647.v1.0.0

License

CC0

Acknowledgements

How to Acknowledge

Funding

Ethics Approvals

How To Cite

Copy
David Hlatky and Gergely Somogyi (2021). Deciphering the scopolamine rat model by preclinical functional MRI. OpenNeuro. [Dataset] doi: 10.18112/openneuro.ds003647.v1.0.0
More citation info

Dataset File Tree

Git Hash: 71054f4 

BIDS Validation

We found 2 Warnings in your dataset. You are not required to fix warnings, but doing so will make your dataset more BIDS compliant.

/sub-01/ses-01/func/sub-01_ses-01_task-rest_acq-SEEPI_run-01_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-rest_bold.json, /task-rest_acq-SEEPI_bold.json, /task-rest_run-01_bold.json, /task-rest_acq-SEEPI_run-01_bold.json, /sub-01/sub-01_task-rest_bold.json, /sub-01/sub-01_task-rest_acq-SEEPI_bold.json, /sub-01/sub-01_task-rest_run-01_bold.json, /sub-01/sub-01_task-rest_acq-SEEPI_run-01_bold.json, /sub-01/ses-01/sub-01_ses-01_task-rest_bold.json, /sub-01/ses-01/sub-01_ses-01_task-rest_acq-SEEPI_bold.json, /sub-01/ses-01/sub-01_ses-01_task-rest_run-01_bold.json, /sub-01/ses-01/sub-01_ses-01_task-rest_acq-SEEPI_run-01_bold.json, /sub-01/ses-01/func/sub-01_ses-01_task-rest_bold.json, /sub-01/ses-01/func/sub-01_ses-01_task-rest_acq-SEEPI_bold.json, /sub-01/ses-01/func/sub-01_ses-01_task-rest_run-01_bold.json, /sub-01/ses-01/func/sub-01_ses-01_task-rest_acq-SEEPI_run-01_bold.json

/sub-01/ses-01/func/sub-01_ses-01_task-whiskerasl_acq-ASL_run-01_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-whiskerasl_bold.json, /task-whiskerasl_acq-ASL_bold.json, /task-whiskerasl_run-01_bold.json, /task-whiskerasl_acq-ASL_run-01_bold.json, /sub-01/sub-01_task-whiskerasl_bold.json, /sub-01/sub-01_task-whiskerasl_acq-ASL_bold.json, /sub-01/sub-01_task-whiskerasl_run-01_bold.json, /sub-01/sub-01_task-whiskerasl_acq-ASL_run-01_bold.json, /sub-01/ses-01/sub-01_ses-01_task-whiskerasl_bold.json, /sub-01/ses-01/sub-01_ses-01_task-whiskerasl_acq-ASL_bold.json, /sub-01/ses-01/sub-01_ses-01_task-whiskerasl_run-01_bold.json, /sub-01/ses-01/sub-01_ses-01_task-whiskerasl_acq-ASL_run-01_bold.json, /sub-01/ses-01/func/sub-01_ses-01_task-whiskerasl_bold.json, /sub-01/ses-01/func/sub-01_ses-01_task-whiskerasl_acq-ASL_bold.json, /sub-01/ses-01/func/sub-01_ses-01_task-whiskerasl_run-01_bold.json, /sub-01/ses-01/func/sub-01_ses-01_task-whiskerasl_acq-ASL_run-01_bold.json

/sub-01/ses-01/func/sub-01_ses-01_task-whiskerasl_acq-ASL_run-02_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-whiskerasl_bold.json, /task-whiskerasl_acq-ASL_bold.json, /task-whiskerasl_run-02_bold.json, /task-whiskerasl_acq-ASL_run-02_bold.json, /sub-01/sub-01_task-whiskerasl_bold.json, /sub-01/sub-01_task-whiskerasl_acq-ASL_bold.json, /sub-01/sub-01_task-whiskerasl_run-02_bold.json, /sub-01/sub-01_task-whiskerasl_acq-ASL_run-02_bold.json, /sub-01/ses-01/sub-01_ses-01_task-whiskerasl_bold.json, /sub-01/ses-01/sub-01_ses-01_task-whiskerasl_acq-ASL_bold.json, /sub-01/ses-01/sub-01_ses-01_task-whiskerasl_run-02_bold.json, /sub-01/ses-01/sub-01_ses-01_task-whiskerasl_acq-ASL_run-02_bold.json, /sub-01/ses-01/func/sub-01_ses-01_task-whiskerasl_bold.json, /sub-01/ses-01/func/sub-01_ses-01_task-whiskerasl_acq-ASL_bold.json, /sub-01/ses-01/func/sub-01_ses-01_task-whiskerasl_run-02_bold.json, /sub-01/ses-01/func/sub-01_ses-01_task-whiskerasl_acq-ASL_run-02_bold.json

/sub-01/ses-01/func/sub-01_ses-01_task-whiskerepi_acq-GEEPI_run-01_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-whiskerepi_bold.json, /task-whiskerepi_acq-GEEPI_bold.json, /task-whiskerepi_run-01_bold.json, /task-whiskerepi_acq-GEEPI_run-01_bold.json, /sub-01/sub-01_task-whiskerepi_bold.json, /sub-01/sub-01_task-whiskerepi_acq-GEEPI_bold.json, /sub-01/sub-01_task-whiskerepi_run-01_bold.json, /sub-01/sub-01_task-whiskerepi_acq-GEEPI_run-01_bold.json, /sub-01/ses-01/sub-01_ses-01_task-whiskerepi_bold.json, /sub-01/ses-01/sub-01_ses-01_task-whiskerepi_acq-GEEPI_bold.json, /sub-01/ses-01/sub-01_ses-01_task-whiskerepi_run-01_bold.json, /sub-01/ses-01/sub-01_ses-01_task-whiskerepi_acq-GEEPI_run-01_bold.json, /sub-01/ses-01/func/sub-01_ses-01_task-whiskerepi_bold.json, /sub-01/ses-01/func/sub-01_ses-01_task-whiskerepi_acq-GEEPI_bold.json, /sub-01/ses-01/func/sub-01_ses-01_task-whiskerepi_run-01_bold.json, /sub-01/ses-01/func/sub-01_ses-01_task-whiskerepi_acq-GEEPI_run-01_bold.json

/sub-01/ses-02/func/sub-01_ses-02_task-rest_acq-SEEPI_run-01_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-rest_bold.json, /task-rest_acq-SEEPI_bold.json, /task-rest_run-01_bold.json, /task-rest_acq-SEEPI_run-01_bold.json, /sub-01/sub-01_task-rest_bold.json, /sub-01/sub-01_task-rest_acq-SEEPI_bold.json, /sub-01/sub-01_task-rest_run-01_bold.json, /sub-01/sub-01_task-rest_acq-SEEPI_run-01_bold.json, /sub-01/ses-02/sub-01_ses-02_task-rest_bold.json, /sub-01/ses-02/sub-01_ses-02_task-rest_acq-SEEPI_bold.json, /sub-01/ses-02/sub-01_ses-02_task-rest_run-01_bold.json, /sub-01/ses-02/sub-01_ses-02_task-rest_acq-SEEPI_run-01_bold.json, /sub-01/ses-02/func/sub-01_ses-02_task-rest_bold.json, /sub-01/ses-02/func/sub-01_ses-02_task-rest_acq-SEEPI_bold.json, /sub-01/ses-02/func/sub-01_ses-02_task-rest_run-01_bold.json, /sub-01/ses-02/func/sub-01_ses-02_task-rest_acq-SEEPI_run-01_bold.json

/sub-01/ses-02/func/sub-01_ses-02_task-whiskerasl_acq-ASL_run-01_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-whiskerasl_bold.json, /task-whiskerasl_acq-ASL_bold.json, /task-whiskerasl_run-01_bold.json, /task-whiskerasl_acq-ASL_run-01_bold.json, /sub-01/sub-01_task-whiskerasl_bold.json, /sub-01/sub-01_task-whiskerasl_acq-ASL_bold.json, /sub-01/sub-01_task-whiskerasl_run-01_bold.json, /sub-01/sub-01_task-whiskerasl_acq-ASL_run-01_bold.json, /sub-01/ses-02/sub-01_ses-02_task-whiskerasl_bold.json, /sub-01/ses-02/sub-01_ses-02_task-whiskerasl_acq-ASL_bold.json, /sub-01/ses-02/sub-01_ses-02_task-whiskerasl_run-01_bold.json, /sub-01/ses-02/sub-01_ses-02_task-whiskerasl_acq-ASL_run-01_bold.json, /sub-01/ses-02/func/sub-01_ses-02_task-whiskerasl_bold.json, /sub-01/ses-02/func/sub-01_ses-02_task-whiskerasl_acq-ASL_bold.json, /sub-01/ses-02/func/sub-01_ses-02_task-whiskerasl_run-01_bold.json, /sub-01/ses-02/func/sub-01_ses-02_task-whiskerasl_acq-ASL_run-01_bold.json

/sub-01/ses-02/func/sub-01_ses-02_task-whiskerasl_acq-ASL_run-02_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-whiskerasl_bold.json, /task-whiskerasl_acq-ASL_bold.json, /task-whiskerasl_run-02_bold.json, /task-whiskerasl_acq-ASL_run-02_bold.json, /sub-01/sub-01_task-whiskerasl_bold.json, /sub-01/sub-01_task-whiskerasl_acq-ASL_bold.json, /sub-01/sub-01_task-whiskerasl_run-02_bold.json, /sub-01/sub-01_task-whiskerasl_acq-ASL_run-02_bold.json, /sub-01/ses-02/sub-01_ses-02_task-whiskerasl_bold.json, /sub-01/ses-02/sub-01_ses-02_task-whiskerasl_acq-ASL_bold.json, /sub-01/ses-02/sub-01_ses-02_task-whiskerasl_run-02_bold.json, /sub-01/ses-02/sub-01_ses-02_task-whiskerasl_acq-ASL_run-02_bold.json, /sub-01/ses-02/func/sub-01_ses-02_task-whiskerasl_bold.json, /sub-01/ses-02/func/sub-01_ses-02_task-whiskerasl_acq-ASL_bold.json, /sub-01/ses-02/func/sub-01_ses-02_task-whiskerasl_run-02_bold.json, /sub-01/ses-02/func/sub-01_ses-02_task-whiskerasl_acq-ASL_run-02_bold.json

/sub-01/ses-02/func/sub-01_ses-02_task-whiskerepi_acq-GEEPI_run-01_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-whiskerepi_bold.json, /task-whiskerepi_acq-GEEPI_bold.json, /task-whiskerepi_run-01_bold.json, /task-whiskerepi_acq-GEEPI_run-01_bold.json, /sub-01/sub-01_task-whiskerepi_bold.json, /sub-01/sub-01_task-whiskerepi_acq-GEEPI_bold.json, /sub-01/sub-01_task-whiskerepi_run-01_bold.json, /sub-01/sub-01_task-whiskerepi_acq-GEEPI_run-01_bold.json, /sub-01/ses-02/sub-01_ses-02_task-whiskerepi_bold.json, /sub-01/ses-02/sub-01_ses-02_task-whiskerepi_acq-GEEPI_bold.json, /sub-01/ses-02/sub-01_ses-02_task-whiskerepi_run-01_bold.json, /sub-01/ses-02/sub-01_ses-02_task-whiskerepi_acq-GEEPI_run-01_bold.json, /sub-01/ses-02/func/sub-01_ses-02_task-whiskerepi_bold.json, /sub-01/ses-02/func/sub-01_ses-02_task-whiskerepi_acq-GEEPI_bold.json, /sub-01/ses-02/func/sub-01_ses-02_task-whiskerepi_run-01_bold.json, /sub-01/ses-02/func/sub-01_ses-02_task-whiskerepi_acq-GEEPI_run-01_bold.json

/sub-01/ses-03/func/sub-01_ses-03_task-rest_acq-SEEPI_run-01_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-rest_bold.json, /task-rest_acq-SEEPI_bold.json, /task-rest_run-01_bold.json, /task-rest_acq-SEEPI_run-01_bold.json, /sub-01/sub-01_task-rest_bold.json, /sub-01/sub-01_task-rest_acq-SEEPI_bold.json, /sub-01/sub-01_task-rest_run-01_bold.json, /sub-01/sub-01_task-rest_acq-SEEPI_run-01_bold.json, /sub-01/ses-03/sub-01_ses-03_task-rest_bold.json, /sub-01/ses-03/sub-01_ses-03_task-rest_acq-SEEPI_bold.json, /sub-01/ses-03/sub-01_ses-03_task-rest_run-01_bold.json, /sub-01/ses-03/sub-01_ses-03_task-rest_acq-SEEPI_run-01_bold.json, /sub-01/ses-03/func/sub-01_ses-03_task-rest_bold.json, /sub-01/ses-03/func/sub-01_ses-03_task-rest_acq-SEEPI_bold.json, /sub-01/ses-03/func/sub-01_ses-03_task-rest_run-01_bold.json, /sub-01/ses-03/func/sub-01_ses-03_task-rest_acq-SEEPI_run-01_bold.json

/sub-01/ses-03/func/sub-01_ses-03_task-whiskerasl_acq-ASL_run-01_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-whiskerasl_bold.json, /task-whiskerasl_acq-ASL_bold.json, /task-whiskerasl_run-01_bold.json, /task-whiskerasl_acq-ASL_run-01_bold.json, /sub-01/sub-01_task-whiskerasl_bold.json, /sub-01/sub-01_task-whiskerasl_acq-ASL_bold.json, /sub-01/sub-01_task-whiskerasl_run-01_bold.json, /sub-01/sub-01_task-whiskerasl_acq-ASL_run-01_bold.json, /sub-01/ses-03/sub-01_ses-03_task-whiskerasl_bold.json, /sub-01/ses-03/sub-01_ses-03_task-whiskerasl_acq-ASL_bold.json, /sub-01/ses-03/sub-01_ses-03_task-whiskerasl_run-01_bold.json, /sub-01/ses-03/sub-01_ses-03_task-whiskerasl_acq-ASL_run-01_bold.json, /sub-01/ses-03/func/sub-01_ses-03_task-whiskerasl_bold.json, /sub-01/ses-03/func/sub-01_ses-03_task-whiskerasl_acq-ASL_bold.json, /sub-01/ses-03/func/sub-01_ses-03_task-whiskerasl_run-01_bold.json, /sub-01/ses-03/func/sub-01_ses-03_task-whiskerasl_acq-ASL_run-01_bold.json

and 328 more files

/sub-19/ses-02/anat/sub-19_ses-02_acq-GEMS_PD.nii.gz

The most common set of dimensions is: 256,256,36,1 (voxels), This file has the dimensions: 192,192,15,1 (voxels). The most common resolution is: 0.12mm x 0.12mm x 0.50mm x 0.50s, This file has the resolution: 0.11mm x 0.11mm x 2.00mm x 0.30s.

/sub-19/ses-03/anat/sub-19_ses-03_acq-GEMS_PD.nii.gz

The most common set of dimensions is: 256,256,36,1 (voxels), This file has the dimensions: 192,192,15,1 (voxels). The most common resolution is: 0.12mm x 0.12mm x 0.50mm x 0.50s, This file has the resolution: 0.11mm x 0.11mm x 2.00mm x 0.30s.

/sub-20/ses-02/anat/sub-20_ses-02_acq-GEMS_PD.nii.gz

The most common set of dimensions is: 256,256,36,1 (voxels), This file has the dimensions: 192,192,15,1 (voxels). The most common resolution is: 0.12mm x 0.12mm x 0.50mm x 0.50s, This file has the resolution: 0.11mm x 0.11mm x 2.00mm x 0.30s.

/sub-20/ses-03/anat/sub-20_ses-03_acq-GEMS_PD.nii.gz

The most common set of dimensions is: 256,256,36,1 (voxels), This file has the dimensions: 192,192,15,1 (voxels). The most common resolution is: 0.12mm x 0.12mm x 0.50mm x 0.50s, This file has the resolution: 0.11mm x 0.11mm x 2.00mm x 0.30s.

/sub-21/ses-02/anat/sub-21_ses-02_acq-GEMS_PD.nii.gz

The most common set of dimensions is: 256,256,36,1 (voxels), This file has the dimensions: 192,192,15,1 (voxels). The most common resolution is: 0.12mm x 0.12mm x 0.50mm x 0.50s, This file has the resolution: 0.11mm x 0.11mm x 2.00mm x 0.30s.

/sub-21/ses-03/anat/sub-21_ses-03_acq-GEMS_PD.nii.gz

The most common set of dimensions is: 256,256,36,1 (voxels), This file has the dimensions: 192,192,15,1 (voxels). The most common resolution is: 0.12mm x 0.12mm x 0.50mm x 0.50s, This file has the resolution: 0.11mm x 0.11mm x 2.00mm x 0.30s.

/sub-21/ses-04/anat/sub-21_ses-04_acq-GEMS_PD.nii.gz

The most common set of dimensions is: 256,256,36,1 (voxels), This file has the dimensions: 192,192,15,1 (voxels). The most common resolution is: 0.12mm x 0.12mm x 0.50mm x 0.50s, This file has the resolution: 0.11mm x 0.11mm x 2.00mm x 0.30s.

/sub-22/ses-02/anat/sub-22_ses-02_acq-GEMS_PD.nii.gz

The most common set of dimensions is: 256,256,36,1 (voxels), This file has the dimensions: 192,192,15,1 (voxels). The most common resolution is: 0.12mm x 0.12mm x 0.50mm x 0.50s, This file has the resolution: 0.11mm x 0.11mm x 2.00mm x 0.30s.

/sub-22/ses-03/anat/sub-22_ses-03_acq-GEMS_PD.nii.gz

The most common set of dimensions is: 256,256,36,1 (voxels), This file has the dimensions: 192,192,15,1 (voxels). The most common resolution is: 0.12mm x 0.12mm x 0.50mm x 0.50s, This file has the resolution: 0.11mm x 0.11mm x 2.00mm x 0.30s.

/sub-23/ses-02/anat/sub-23_ses-02_acq-GEMS_PD.nii.gz

The most common set of dimensions is: 256,256,36,1 (voxels), This file has the dimensions: 192,192,15,1 (voxels). The most common resolution is: 0.12mm x 0.12mm x 0.50mm x 0.50s, This file has the resolution: 0.11mm x 0.11mm x 2.00mm x 0.30s.

and 28 more files

Dataset File Tree

Git Hash: 71054f4 

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