Visser, Scholte, Beemsterboer, & Kindt (2013) Nature Neuroscience

uploaded by Joe Bathelt on 2021-03-01 - 5 months ago
last modified on 2021-03-01 - 5 months ago
authored by Renee M Visser, H Steven Scholte, Tinka Beemsterboer, Merel Kindt
09
We found 2 Warnings in your dataset. You are not required to fix warnings, but doing so will make your dataset more BIDS compliant.

/sub-sc001/func/sub-sc001_task-RepMem1_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-RepMem1_bold.json, /sub-sc001/sub-sc001_task-RepMem1_bold.json, /sub-sc001/func/sub-sc001_task-RepMem1_bold.json

/sub-sc001/func/sub-sc001_task-RepMem2B_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-RepMem2B_bold.json, /sub-sc001/sub-sc001_task-RepMem2B_bold.json, /sub-sc001/func/sub-sc001_task-RepMem2B_bold.json

/sub-sc002/func/sub-sc002_task-RepMem1_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-RepMem1_bold.json, /sub-sc002/sub-sc002_task-RepMem1_bold.json, /sub-sc002/func/sub-sc002_task-RepMem1_bold.json

/sub-sc002/func/sub-sc002_task-RepMem2B_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-RepMem2B_bold.json, /sub-sc002/sub-sc002_task-RepMem2B_bold.json, /sub-sc002/func/sub-sc002_task-RepMem2B_bold.json

/sub-sc003/func/sub-sc003_task-RepMem1_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-RepMem1_bold.json, /sub-sc003/sub-sc003_task-RepMem1_bold.json, /sub-sc003/func/sub-sc003_task-RepMem1_bold.json

/sub-sc003/func/sub-sc003_task-RepMem2B_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-RepMem2B_bold.json, /sub-sc003/sub-sc003_task-RepMem2B_bold.json, /sub-sc003/func/sub-sc003_task-RepMem2B_bold.json

/sub-sc004/func/sub-sc004_task-RepMem1_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-RepMem1_bold.json, /sub-sc004/sub-sc004_task-RepMem1_bold.json, /sub-sc004/func/sub-sc004_task-RepMem1_bold.json

/sub-sc004/func/sub-sc004_task-RepMem2B_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-RepMem2B_bold.json, /sub-sc004/sub-sc004_task-RepMem2B_bold.json, /sub-sc004/func/sub-sc004_task-RepMem2B_bold.json

/sub-sc005/func/sub-sc005_task-RepMem1_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-RepMem1_bold.json, /sub-sc005/sub-sc005_task-RepMem1_bold.json, /sub-sc005/func/sub-sc005_task-RepMem1_bold.json

/sub-sc005/func/sub-sc005_task-RepMem2B_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-RepMem2B_bold.json, /sub-sc005/sub-sc005_task-RepMem2B_bold.json, /sub-sc005/func/sub-sc005_task-RepMem2B_bold.json

and 66 more files

/participants.tsv

Tabular file contains custom columns not described in a data dictionary

Columns: age, sex, handedness not defined, please define in: /participants.json

/sub-sc001/func/sub-sc001_task-RepMem1_events.tsv

Tabular file contains custom columns not described in a data dictionary

Columns: stimulus not defined, please define in: /events.json, /task-RepMem1_events.json,/sub-sc001/sub-sc001_events.json,/sub-sc001/sub-sc001_task-RepMem1_events.json,/sub-sc001/func/sub-sc001_events.json,/sub-sc001/func/sub-sc001_task-RepMem1_events.json

/sub-sc001/func/sub-sc001_task-RepMem2B_events.tsv

Tabular file contains custom columns not described in a data dictionary

Columns: stimulus not defined, please define in: /events.json, /task-RepMem2B_events.json,/sub-sc001/sub-sc001_events.json,/sub-sc001/sub-sc001_task-RepMem2B_events.json,/sub-sc001/func/sub-sc001_events.json,/sub-sc001/func/sub-sc001_task-RepMem2B_events.json

/sub-sc002/func/sub-sc002_task-RepMem1_events.tsv

Tabular file contains custom columns not described in a data dictionary

Columns: stimulus not defined, please define in: /events.json, /task-RepMem1_events.json,/sub-sc002/sub-sc002_events.json,/sub-sc002/sub-sc002_task-RepMem1_events.json,/sub-sc002/func/sub-sc002_events.json,/sub-sc002/func/sub-sc002_task-RepMem1_events.json

/sub-sc002/func/sub-sc002_task-RepMem2B_events.tsv

Tabular file contains custom columns not described in a data dictionary

Columns: stimulus not defined, please define in: /events.json, /task-RepMem2B_events.json,/sub-sc002/sub-sc002_events.json,/sub-sc002/sub-sc002_task-RepMem2B_events.json,/sub-sc002/func/sub-sc002_events.json,/sub-sc002/func/sub-sc002_task-RepMem2B_events.json

/sub-sc003/func/sub-sc003_task-RepMem1_events.tsv

Tabular file contains custom columns not described in a data dictionary

Columns: stimulus not defined, please define in: /events.json, /task-RepMem1_events.json,/sub-sc003/sub-sc003_events.json,/sub-sc003/sub-sc003_task-RepMem1_events.json,/sub-sc003/func/sub-sc003_events.json,/sub-sc003/func/sub-sc003_task-RepMem1_events.json

/sub-sc003/func/sub-sc003_task-RepMem2B_events.tsv

Tabular file contains custom columns not described in a data dictionary

Columns: stimulus not defined, please define in: /events.json, /task-RepMem2B_events.json,/sub-sc003/sub-sc003_events.json,/sub-sc003/sub-sc003_task-RepMem2B_events.json,/sub-sc003/func/sub-sc003_events.json,/sub-sc003/func/sub-sc003_task-RepMem2B_events.json

/sub-sc004/func/sub-sc004_task-RepMem1_events.tsv

Tabular file contains custom columns not described in a data dictionary

Columns: stimulus not defined, please define in: /events.json, /task-RepMem1_events.json,/sub-sc004/sub-sc004_events.json,/sub-sc004/sub-sc004_task-RepMem1_events.json,/sub-sc004/func/sub-sc004_events.json,/sub-sc004/func/sub-sc004_task-RepMem1_events.json

/sub-sc004/func/sub-sc004_task-RepMem2B_events.tsv

Tabular file contains custom columns not described in a data dictionary

Columns: stimulus not defined, please define in: /events.json, /task-RepMem2B_events.json,/sub-sc004/sub-sc004_events.json,/sub-sc004/sub-sc004_task-RepMem2B_events.json,/sub-sc004/func/sub-sc004_events.json,/sub-sc004/func/sub-sc004_task-RepMem2B_events.json

/sub-sc005/func/sub-sc005_task-RepMem1_events.tsv

Tabular file contains custom columns not described in a data dictionary

Columns: stimulus not defined, please define in: /events.json, /task-RepMem1_events.json,/sub-sc005/sub-sc005_events.json,/sub-sc005/sub-sc005_task-RepMem1_events.json,/sub-sc005/func/sub-sc005_events.json,/sub-sc005/func/sub-sc005_task-RepMem1_events.json

and 67 more files

OpenNeuro Accession Number: ds003550
Files: 309, Size: 8.88GB, Subjects: 38, Session: 1
Available Tasks: RepMem2B, RepMem1
Available Modalities: T1w, bold, events

README

Description: Dataset from Visser, Scholte, Beemsterboer, and Kindt 2013 published in Nature Neuroscience. Please refer to the publication for details regarding the participants and experiment.

Please cite the following references if you use these data: Visser, R. M., Scholte, H. S., Beemsterboer, T., and Kindt, M. (n.d.). Neural pattern similarity predicts long-term fear memory. Nature Neuroscience, 16(4). https://doi.org/10.1038/nn.3345

Release history: 9 February 2021 - initial release

Authors

  • Renee M Visser
  • H Steven Scholte
  • Tinka Beemsterboer
  • Merel Kindt

Dataset DOI

10.18112/openneuro.ds003550.v1.0.1

License

CC0

Acknowledgements

The authors thank J. Wijnen and M. Spaan for technical assistance.

How to Acknowledge

Please cite this paper: https://doi.org/10.1038/nn.3345

Funding

  • This work was supported by a Vici grant (M. Kindt, #45307-006) from the Netherlands Organization for Scientific Research.

References and Links

Ethics Approvals

  • Procedures were executed in compliance with relevant laws and institutional guidelines and were approved by the local ethics committee (University of Amsterdam, The Netherlands; 2011-CP-1565).

How To Cite

Copy
Renee M Visser and H Steven Scholte and Tinka Beemsterboer and Merel Kindt (2021). Visser, Scholte, Beemsterboer, & Kindt (2013) Nature Neuroscience. OpenNeuro. [Dataset] doi: 10.18112/openneuro.ds003550.v1.0.1
More citation info

Visser, Scholte, Beemsterboer, & Kindt (2013) Nature Neuroscience

uploaded by Joe Bathelt on 2021-03-01 - 5 months ago
last modified on 2021-03-01 - 5 months ago
authored by Renee M Visser, H Steven Scholte, Tinka Beemsterboer, Merel Kindt
09

OpenNeuro Accession Number: ds003550
Files: 309, Size: 8.88GB, Subjects: 38, Session: 1
Available Tasks: RepMem2B, RepMem1
Available Modalities: T1w, bold, events

README

Description: Dataset from Visser, Scholte, Beemsterboer, and Kindt 2013 published in Nature Neuroscience. Please refer to the publication for details regarding the participants and experiment.

Please cite the following references if you use these data: Visser, R. M., Scholte, H. S., Beemsterboer, T., and Kindt, M. (n.d.). Neural pattern similarity predicts long-term fear memory. Nature Neuroscience, 16(4). https://doi.org/10.1038/nn.3345

Release history: 9 February 2021 - initial release

Authors

  • Renee M Visser
  • H Steven Scholte
  • Tinka Beemsterboer
  • Merel Kindt

Dataset DOI

10.18112/openneuro.ds003550.v1.0.1

License

CC0

Acknowledgements

The authors thank J. Wijnen and M. Spaan for technical assistance.

How to Acknowledge

Please cite this paper: https://doi.org/10.1038/nn.3345

Funding

  • This work was supported by a Vici grant (M. Kindt, #45307-006) from the Netherlands Organization for Scientific Research.

References and Links

Ethics Approvals

  • Procedures were executed in compliance with relevant laws and institutional guidelines and were approved by the local ethics committee (University of Amsterdam, The Netherlands; 2011-CP-1565).

How To Cite

Copy
Renee M Visser and H Steven Scholte and Tinka Beemsterboer and Merel Kindt (2021). Visser, Scholte, Beemsterboer, & Kindt (2013) Nature Neuroscience. OpenNeuro. [Dataset] doi: 10.18112/openneuro.ds003550.v1.0.1
More citation info

Dataset File Tree

Git Hash: 43d8677 

BIDS Validation

We found 2 Warnings in your dataset. You are not required to fix warnings, but doing so will make your dataset more BIDS compliant.

/sub-sc001/func/sub-sc001_task-RepMem1_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-RepMem1_bold.json, /sub-sc001/sub-sc001_task-RepMem1_bold.json, /sub-sc001/func/sub-sc001_task-RepMem1_bold.json

/sub-sc001/func/sub-sc001_task-RepMem2B_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-RepMem2B_bold.json, /sub-sc001/sub-sc001_task-RepMem2B_bold.json, /sub-sc001/func/sub-sc001_task-RepMem2B_bold.json

/sub-sc002/func/sub-sc002_task-RepMem1_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-RepMem1_bold.json, /sub-sc002/sub-sc002_task-RepMem1_bold.json, /sub-sc002/func/sub-sc002_task-RepMem1_bold.json

/sub-sc002/func/sub-sc002_task-RepMem2B_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-RepMem2B_bold.json, /sub-sc002/sub-sc002_task-RepMem2B_bold.json, /sub-sc002/func/sub-sc002_task-RepMem2B_bold.json

/sub-sc003/func/sub-sc003_task-RepMem1_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-RepMem1_bold.json, /sub-sc003/sub-sc003_task-RepMem1_bold.json, /sub-sc003/func/sub-sc003_task-RepMem1_bold.json

/sub-sc003/func/sub-sc003_task-RepMem2B_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-RepMem2B_bold.json, /sub-sc003/sub-sc003_task-RepMem2B_bold.json, /sub-sc003/func/sub-sc003_task-RepMem2B_bold.json

/sub-sc004/func/sub-sc004_task-RepMem1_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-RepMem1_bold.json, /sub-sc004/sub-sc004_task-RepMem1_bold.json, /sub-sc004/func/sub-sc004_task-RepMem1_bold.json

/sub-sc004/func/sub-sc004_task-RepMem2B_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-RepMem2B_bold.json, /sub-sc004/sub-sc004_task-RepMem2B_bold.json, /sub-sc004/func/sub-sc004_task-RepMem2B_bold.json

/sub-sc005/func/sub-sc005_task-RepMem1_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-RepMem1_bold.json, /sub-sc005/sub-sc005_task-RepMem1_bold.json, /sub-sc005/func/sub-sc005_task-RepMem1_bold.json

/sub-sc005/func/sub-sc005_task-RepMem2B_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-RepMem2B_bold.json, /sub-sc005/sub-sc005_task-RepMem2B_bold.json, /sub-sc005/func/sub-sc005_task-RepMem2B_bold.json

and 66 more files

/participants.tsv

Tabular file contains custom columns not described in a data dictionary

Columns: age, sex, handedness not defined, please define in: /participants.json

/sub-sc001/func/sub-sc001_task-RepMem1_events.tsv

Tabular file contains custom columns not described in a data dictionary

Columns: stimulus not defined, please define in: /events.json, /task-RepMem1_events.json,/sub-sc001/sub-sc001_events.json,/sub-sc001/sub-sc001_task-RepMem1_events.json,/sub-sc001/func/sub-sc001_events.json,/sub-sc001/func/sub-sc001_task-RepMem1_events.json

/sub-sc001/func/sub-sc001_task-RepMem2B_events.tsv

Tabular file contains custom columns not described in a data dictionary

Columns: stimulus not defined, please define in: /events.json, /task-RepMem2B_events.json,/sub-sc001/sub-sc001_events.json,/sub-sc001/sub-sc001_task-RepMem2B_events.json,/sub-sc001/func/sub-sc001_events.json,/sub-sc001/func/sub-sc001_task-RepMem2B_events.json

/sub-sc002/func/sub-sc002_task-RepMem1_events.tsv

Tabular file contains custom columns not described in a data dictionary

Columns: stimulus not defined, please define in: /events.json, /task-RepMem1_events.json,/sub-sc002/sub-sc002_events.json,/sub-sc002/sub-sc002_task-RepMem1_events.json,/sub-sc002/func/sub-sc002_events.json,/sub-sc002/func/sub-sc002_task-RepMem1_events.json

/sub-sc002/func/sub-sc002_task-RepMem2B_events.tsv

Tabular file contains custom columns not described in a data dictionary

Columns: stimulus not defined, please define in: /events.json, /task-RepMem2B_events.json,/sub-sc002/sub-sc002_events.json,/sub-sc002/sub-sc002_task-RepMem2B_events.json,/sub-sc002/func/sub-sc002_events.json,/sub-sc002/func/sub-sc002_task-RepMem2B_events.json

/sub-sc003/func/sub-sc003_task-RepMem1_events.tsv

Tabular file contains custom columns not described in a data dictionary

Columns: stimulus not defined, please define in: /events.json, /task-RepMem1_events.json,/sub-sc003/sub-sc003_events.json,/sub-sc003/sub-sc003_task-RepMem1_events.json,/sub-sc003/func/sub-sc003_events.json,/sub-sc003/func/sub-sc003_task-RepMem1_events.json

/sub-sc003/func/sub-sc003_task-RepMem2B_events.tsv

Tabular file contains custom columns not described in a data dictionary

Columns: stimulus not defined, please define in: /events.json, /task-RepMem2B_events.json,/sub-sc003/sub-sc003_events.json,/sub-sc003/sub-sc003_task-RepMem2B_events.json,/sub-sc003/func/sub-sc003_events.json,/sub-sc003/func/sub-sc003_task-RepMem2B_events.json

/sub-sc004/func/sub-sc004_task-RepMem1_events.tsv

Tabular file contains custom columns not described in a data dictionary

Columns: stimulus not defined, please define in: /events.json, /task-RepMem1_events.json,/sub-sc004/sub-sc004_events.json,/sub-sc004/sub-sc004_task-RepMem1_events.json,/sub-sc004/func/sub-sc004_events.json,/sub-sc004/func/sub-sc004_task-RepMem1_events.json

/sub-sc004/func/sub-sc004_task-RepMem2B_events.tsv

Tabular file contains custom columns not described in a data dictionary

Columns: stimulus not defined, please define in: /events.json, /task-RepMem2B_events.json,/sub-sc004/sub-sc004_events.json,/sub-sc004/sub-sc004_task-RepMem2B_events.json,/sub-sc004/func/sub-sc004_events.json,/sub-sc004/func/sub-sc004_task-RepMem2B_events.json

/sub-sc005/func/sub-sc005_task-RepMem1_events.tsv

Tabular file contains custom columns not described in a data dictionary

Columns: stimulus not defined, please define in: /events.json, /task-RepMem1_events.json,/sub-sc005/sub-sc005_events.json,/sub-sc005/sub-sc005_task-RepMem1_events.json,/sub-sc005/func/sub-sc005_events.json,/sub-sc005/func/sub-sc005_task-RepMem1_events.json

and 67 more files

Dataset File Tree

Git Hash: 43d8677 

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