ParanoiaStory

uploaded by Emily Finn on 2018-04-19 - about 3 years ago
last modified on 2018-10-19 - over 2 years ago
authored by E.S. Finn, P.R. Corlett, G. Chen, P.A. Bandettini, R.T. Constable
514722
We found 5 Warnings in your dataset. You are not required to fix warnings, but doing so will make your dataset more BIDS compliant.

/sub-tb2994/func/sub-tb2994_task-story1_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-story1_bold.json, /bold.json, /sub-tb2994/sub-tb2994_task-story1_bold.json, /sub-tb2994/sub-tb2994_bold.json, /sub-tb2994/func/sub-tb2994_task-story1_bold.json, /sub-tb2994/func/sub-tb2994_bold.json

/sub-tb2994/func/sub-tb2994_task-story2_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-story2_bold.json, /bold.json, /sub-tb2994/sub-tb2994_task-story2_bold.json, /sub-tb2994/sub-tb2994_bold.json, /sub-tb2994/func/sub-tb2994_task-story2_bold.json, /sub-tb2994/func/sub-tb2994_bold.json

/sub-tb2994/func/sub-tb2994_task-story3_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-story3_bold.json, /bold.json, /sub-tb2994/sub-tb2994_task-story3_bold.json, /sub-tb2994/sub-tb2994_bold.json, /sub-tb2994/func/sub-tb2994_task-story3_bold.json, /sub-tb2994/func/sub-tb2994_bold.json

/sub-tb3132/func/sub-tb3132_task-story1_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-story1_bold.json, /bold.json, /sub-tb3132/sub-tb3132_task-story1_bold.json, /sub-tb3132/sub-tb3132_bold.json, /sub-tb3132/func/sub-tb3132_task-story1_bold.json, /sub-tb3132/func/sub-tb3132_bold.json

/sub-tb3132/func/sub-tb3132_task-story2_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-story2_bold.json, /bold.json, /sub-tb3132/sub-tb3132_task-story2_bold.json, /sub-tb3132/sub-tb3132_bold.json, /sub-tb3132/func/sub-tb3132_task-story2_bold.json, /sub-tb3132/func/sub-tb3132_bold.json

/sub-tb3132/func/sub-tb3132_task-story3_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-story3_bold.json, /bold.json, /sub-tb3132/sub-tb3132_task-story3_bold.json, /sub-tb3132/sub-tb3132_bold.json, /sub-tb3132/func/sub-tb3132_task-story3_bold.json, /sub-tb3132/func/sub-tb3132_bold.json

/sub-tb3240/func/sub-tb3240_task-story1_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-story1_bold.json, /bold.json, /sub-tb3240/sub-tb3240_task-story1_bold.json, /sub-tb3240/sub-tb3240_bold.json, /sub-tb3240/func/sub-tb3240_task-story1_bold.json, /sub-tb3240/func/sub-tb3240_bold.json

/sub-tb3240/func/sub-tb3240_task-story2_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-story2_bold.json, /bold.json, /sub-tb3240/sub-tb3240_task-story2_bold.json, /sub-tb3240/sub-tb3240_bold.json, /sub-tb3240/func/sub-tb3240_task-story2_bold.json, /sub-tb3240/func/sub-tb3240_bold.json

/sub-tb3240/func/sub-tb3240_task-story3_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-story3_bold.json, /bold.json, /sub-tb3240/sub-tb3240_task-story3_bold.json, /sub-tb3240/sub-tb3240_bold.json, /sub-tb3240/func/sub-tb3240_task-story3_bold.json, /sub-tb3240/func/sub-tb3240_bold.json

/sub-tb3279/func/sub-tb3279_task-story1_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-story1_bold.json, /bold.json, /sub-tb3279/sub-tb3279_task-story1_bold.json, /sub-tb3279/sub-tb3279_bold.json, /sub-tb3279/func/sub-tb3279_task-story1_bold.json, /sub-tb3279/func/sub-tb3279_bold.json

and 56 more files

/sub-tb4450/anat/sub-tb4450_T1w.nii.gz

The most common set of dimensions is: 256,256,208 (voxels), This file has the dimensions: 208,256,256 (voxels).

/sub-tb4547/anat/sub-tb4547_T1w.nii.gz

The most common set of dimensions is: 256,256,208 (voxels), This file has the dimensions: 208,256,256 (voxels).

/sub-tb4572/anat/sub-tb4572_T1w.nii.gz

The most common set of dimensions is: 256,256,208 (voxels), This file has the dimensions: 208,256,256 (voxels).

There are files in the /stimuli directory that are not utilized in any _events.tsv file.

There are files in the /stimuli directory that are not utilized in any _events.tsv file.

/participants.tsv

Tabular file contains custom columns not described in a data dictionary

Columns: age, sex, gptsa_score not defined, please define in: /participants.json

/task-story1_events.tsv

The onset of the last event is less than half the total duration of the corresponding scan. This design is suspiciously short.

/task-story1_events.tsv

The onset of the last event is less than half the total duration of the corresponding scan. This design is suspiciously short.

/task-story1_events.tsv

The onset of the last event is less than half the total duration of the corresponding scan. This design is suspiciously short.

/task-story1_events.tsv

The onset of the last event is less than half the total duration of the corresponding scan. This design is suspiciously short.

/task-story1_events.tsv

The onset of the last event is less than half the total duration of the corresponding scan. This design is suspiciously short.

/task-story1_events.tsv

The onset of the last event is less than half the total duration of the corresponding scan. This design is suspiciously short.

/task-story1_events.tsv

The onset of the last event is less than half the total duration of the corresponding scan. This design is suspiciously short.

/task-story1_events.tsv

The onset of the last event is less than half the total duration of the corresponding scan. This design is suspiciously short.

/task-story1_events.tsv

The onset of the last event is less than half the total duration of the corresponding scan. This design is suspiciously short.

/task-story1_events.tsv

The onset of the last event is less than half the total duration of the corresponding scan. This design is suspiciously short.

and 56 more files

OpenNeuro Accession Number: ds001338
Files: 1147, Size: 47.06GB, Subjects: 22, Session: 1
Available Tasks: story1, story2, story3
Available Modalities: T1w, bold

README

This dataset contains raw fMRI data for 22 healthy participants listening to an original audio narrative designed to elicit individual variation along an axis of suspicion/paranoia. For more details, please see the following publication:

Finn ES, Corlett PR, Chen G, Bandettini PA, Constable RT. (2018) "Trait paranoia shapes inter-subject synchrony in brain activity during an ambiguous social narrative." Nature Communications, 9: 2043. https://doi.org/10.1038/s41467-018-04387-2

Authors

  • E.S. Finn
  • P.R. Corlett
  • G. Chen
  • P.A. Bandettini
  • R.T. Constable

Dataset DOI

10.18112/openneuro.ds001338.v1.0.0

License

Creative Commons Attribution-NonCommercial 4.0 International

Acknowledgements

How to Acknowledge

Please cite original paper:

Finn ES, Corlett PR, Chen G, Bandettini PA, Constable RT. (2018) "Trait paranoia shapes inter-subject synchrony in brain activity during an ambiguous social narrative." Nature Communications, 9: 2043. https://doi.org/10.1038/s41467-018-04387-2

Funding

*

References and Links

Ethics Approvals

How To Cite

Copy
E.S. Finn and P.R. Corlett and G. Chen and P.A. Bandettini and R.T. Constable (2018). ParanoiaStory. OpenNeuro. [Dataset] doi: 10.18112/openneuro.ds001338.v1.0.0
More citation info

ParanoiaStory

uploaded by Emily Finn on 2018-04-19 - about 3 years ago
last modified on 2018-10-19 - over 2 years ago
authored by E.S. Finn, P.R. Corlett, G. Chen, P.A. Bandettini, R.T. Constable
514722

OpenNeuro Accession Number: ds001338
Files: 1147, Size: 47.06GB, Subjects: 22, Session: 1
Available Tasks: story1, story2, story3
Available Modalities: T1w, bold

README

This dataset contains raw fMRI data for 22 healthy participants listening to an original audio narrative designed to elicit individual variation along an axis of suspicion/paranoia. For more details, please see the following publication:

Finn ES, Corlett PR, Chen G, Bandettini PA, Constable RT. (2018) "Trait paranoia shapes inter-subject synchrony in brain activity during an ambiguous social narrative." Nature Communications, 9: 2043. https://doi.org/10.1038/s41467-018-04387-2

Authors

  • E.S. Finn
  • P.R. Corlett
  • G. Chen
  • P.A. Bandettini
  • R.T. Constable

Dataset DOI

10.18112/openneuro.ds001338.v1.0.0

License

Creative Commons Attribution-NonCommercial 4.0 International

Acknowledgements

How to Acknowledge

Please cite original paper:

Finn ES, Corlett PR, Chen G, Bandettini PA, Constable RT. (2018) "Trait paranoia shapes inter-subject synchrony in brain activity during an ambiguous social narrative." Nature Communications, 9: 2043. https://doi.org/10.1038/s41467-018-04387-2

Funding

*

References and Links

Ethics Approvals

How To Cite

Copy
E.S. Finn and P.R. Corlett and G. Chen and P.A. Bandettini and R.T. Constable (2018). ParanoiaStory. OpenNeuro. [Dataset] doi: 10.18112/openneuro.ds001338.v1.0.0
More citation info

Dataset File Tree

Git Hash: e44102f 

BIDS Validation

We found 5 Warnings in your dataset. You are not required to fix warnings, but doing so will make your dataset more BIDS compliant.

/sub-tb2994/func/sub-tb2994_task-story1_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-story1_bold.json, /bold.json, /sub-tb2994/sub-tb2994_task-story1_bold.json, /sub-tb2994/sub-tb2994_bold.json, /sub-tb2994/func/sub-tb2994_task-story1_bold.json, /sub-tb2994/func/sub-tb2994_bold.json

/sub-tb2994/func/sub-tb2994_task-story2_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-story2_bold.json, /bold.json, /sub-tb2994/sub-tb2994_task-story2_bold.json, /sub-tb2994/sub-tb2994_bold.json, /sub-tb2994/func/sub-tb2994_task-story2_bold.json, /sub-tb2994/func/sub-tb2994_bold.json

/sub-tb2994/func/sub-tb2994_task-story3_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-story3_bold.json, /bold.json, /sub-tb2994/sub-tb2994_task-story3_bold.json, /sub-tb2994/sub-tb2994_bold.json, /sub-tb2994/func/sub-tb2994_task-story3_bold.json, /sub-tb2994/func/sub-tb2994_bold.json

/sub-tb3132/func/sub-tb3132_task-story1_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-story1_bold.json, /bold.json, /sub-tb3132/sub-tb3132_task-story1_bold.json, /sub-tb3132/sub-tb3132_bold.json, /sub-tb3132/func/sub-tb3132_task-story1_bold.json, /sub-tb3132/func/sub-tb3132_bold.json

/sub-tb3132/func/sub-tb3132_task-story2_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-story2_bold.json, /bold.json, /sub-tb3132/sub-tb3132_task-story2_bold.json, /sub-tb3132/sub-tb3132_bold.json, /sub-tb3132/func/sub-tb3132_task-story2_bold.json, /sub-tb3132/func/sub-tb3132_bold.json

/sub-tb3132/func/sub-tb3132_task-story3_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-story3_bold.json, /bold.json, /sub-tb3132/sub-tb3132_task-story3_bold.json, /sub-tb3132/sub-tb3132_bold.json, /sub-tb3132/func/sub-tb3132_task-story3_bold.json, /sub-tb3132/func/sub-tb3132_bold.json

/sub-tb3240/func/sub-tb3240_task-story1_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-story1_bold.json, /bold.json, /sub-tb3240/sub-tb3240_task-story1_bold.json, /sub-tb3240/sub-tb3240_bold.json, /sub-tb3240/func/sub-tb3240_task-story1_bold.json, /sub-tb3240/func/sub-tb3240_bold.json

/sub-tb3240/func/sub-tb3240_task-story2_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-story2_bold.json, /bold.json, /sub-tb3240/sub-tb3240_task-story2_bold.json, /sub-tb3240/sub-tb3240_bold.json, /sub-tb3240/func/sub-tb3240_task-story2_bold.json, /sub-tb3240/func/sub-tb3240_bold.json

/sub-tb3240/func/sub-tb3240_task-story3_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-story3_bold.json, /bold.json, /sub-tb3240/sub-tb3240_task-story3_bold.json, /sub-tb3240/sub-tb3240_bold.json, /sub-tb3240/func/sub-tb3240_task-story3_bold.json, /sub-tb3240/func/sub-tb3240_bold.json

/sub-tb3279/func/sub-tb3279_task-story1_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /task-story1_bold.json, /bold.json, /sub-tb3279/sub-tb3279_task-story1_bold.json, /sub-tb3279/sub-tb3279_bold.json, /sub-tb3279/func/sub-tb3279_task-story1_bold.json, /sub-tb3279/func/sub-tb3279_bold.json

and 56 more files

/sub-tb4450/anat/sub-tb4450_T1w.nii.gz

The most common set of dimensions is: 256,256,208 (voxels), This file has the dimensions: 208,256,256 (voxels).

/sub-tb4547/anat/sub-tb4547_T1w.nii.gz

The most common set of dimensions is: 256,256,208 (voxels), This file has the dimensions: 208,256,256 (voxels).

/sub-tb4572/anat/sub-tb4572_T1w.nii.gz

The most common set of dimensions is: 256,256,208 (voxels), This file has the dimensions: 208,256,256 (voxels).

There are files in the /stimuli directory that are not utilized in any _events.tsv file.

There are files in the /stimuli directory that are not utilized in any _events.tsv file.

/participants.tsv

Tabular file contains custom columns not described in a data dictionary

Columns: age, sex, gptsa_score not defined, please define in: /participants.json

/task-story1_events.tsv

The onset of the last event is less than half the total duration of the corresponding scan. This design is suspiciously short.

/task-story1_events.tsv

The onset of the last event is less than half the total duration of the corresponding scan. This design is suspiciously short.

/task-story1_events.tsv

The onset of the last event is less than half the total duration of the corresponding scan. This design is suspiciously short.

/task-story1_events.tsv

The onset of the last event is less than half the total duration of the corresponding scan. This design is suspiciously short.

/task-story1_events.tsv

The onset of the last event is less than half the total duration of the corresponding scan. This design is suspiciously short.

/task-story1_events.tsv

The onset of the last event is less than half the total duration of the corresponding scan. This design is suspiciously short.

/task-story1_events.tsv

The onset of the last event is less than half the total duration of the corresponding scan. This design is suspiciously short.

/task-story1_events.tsv

The onset of the last event is less than half the total duration of the corresponding scan. This design is suspiciously short.

/task-story1_events.tsv

The onset of the last event is less than half the total duration of the corresponding scan. This design is suspiciously short.

/task-story1_events.tsv

The onset of the last event is less than half the total duration of the corresponding scan. This design is suspiciously short.

and 56 more files

Dataset File Tree

Git Hash: e44102f 

Comments

Please sign in to contribute to the discussion.
By zhaiyupsy@gmail.com - over 2 years ago
This is a elegant and fantastic study. I love it! I only have some small questions.
1. I notice that there are the analyses about how high- (low-) paranoia individuals processed mentalizing sentences or non-mentalizing sentences, but without the analyses about whether there are differences between mentalizing sentences and non-mentalizing sentences that processed by high- (low-) paranoia individuals.
2.I would definitely appreciate that if you can provide: the specific psychological and cognitive assessments that mentioned in visit 1, and the specific results of individuals' post-narrative questionaires, free-recall and multiple-choice comprehension.

Thanks again for sharing this data!
By krzysztof.gorgolewski@gmail.com - about 3 years ago
Fantastic contribution! Thank you so much!

I noticed a couple of issues with the metadata, that might be worth correcting to make the dataset more BIDS compliant and easier to reuse
1) "/stimulus" folder should be renamed to "/stimuli" and removed from .bidsignore file
2) _events.tsv files seem to be missing in your case it's my best guess that they should only include onsets to stimuli files for example ("stim_file" column is a path relative to "/stimuli")

onset duration stim_file
1.2 49.6 story1_audio.wav
You can find more details in section 8.5 of http://bids.neuroimaging.io/bids_spec1.1.0.pdf

Thanks again for sharing this data!
By esfinn@gmail.com - about 3 years ago
Hi Chris, belated thanks for the above suggestions. They have now been implemented.
By krzysztof.gorgolewski@gmail.com - about 3 years ago
Super cool! Thanks! I think you might've forgotten to publish your updated snapshot.

PS Awesome climbing profile pic!
By esfinn@gmail.com - about 3 years ago
Ha, thanks (on both counts)! Should be published now.
By aleph4@gmail.com - over 2 years ago
Hey Emily. Great upload! I do have a minor comment however. If I'm correct, it seems that there is a single story that is split up into three runs. I would argue this suggests there is a single task with three runs, rather than three tasks with one run.

This would at least be more consistent with the way other naturalistic datasets are uploaded.
What I'll do is modify this dataset, upload it using datalad, and if you wish you may merge my changes.

Thanks again!
By krzysztof.gorgolewski@gmail.com - over 2 years ago
This issue of interpretation of the standard is being discussed at https://github.com/bids-standard/bids-specification/issues/146
By manpakravan@gmail.com - over 2 years ago
Hi,
I am analyzing this valuable dataset, I need to know the trait paranoia score (or GPTS-A score) of each subject. I downloaded the database, but, I could not find any file specifying the GPTS-A score of subjects. It would be appreciated if you guide me in this regards.
By esfinn@gmail.com - over 2 years ago
Hello, thanks for your interest. There is now a participants.tsv file with the age, sex, and GPTS-A score for all subjects.