MRI
BTC_preop

OpenNeuro Accession Number: ds001226Files: 436Size: 5.28GB

BIDS Validation

2 Warnings Valid
FilesDownloadMetadata
BTC_preop
BTC_preop
  •   CHANGES
  •   dataset_description.json
  •   participants.tsv
  •   README
  • derivatives
  • sub-CON01
  • sub-CON02
  • sub-CON03
  • sub-CON04
  • sub-CON05
  • sub-CON06
  • sub-CON07
  • sub-CON08
  • sub-CON09
  • sub-CON10
  • sub-CON11
  • sub-PAT01
  • sub-PAT02
  • sub-PAT03
  • sub-PAT05
  • sub-PAT06
  • sub-PAT07
  • sub-PAT08
  • sub-PAT10
  • sub-PAT11
  • sub-PAT13
  • sub-PAT14
  • sub-PAT15
  • sub-PAT16
  • sub-PAT17
  • sub-PAT19
  • sub-PAT20
  • sub-PAT22
  • sub-PAT23
  • sub-PAT24
  • sub-PAT25
  • sub-PAT26
  • sub-PAT27
  • sub-PAT28
  • sub-PAT29
  • sub-PAT31

README

Brain Tumor Connectomics Data

Pre-operative data of 11 glioma patients, 14 meningioma patients and 11 control subjects that were used in the papers

Aerts H, Schirner M, Jeurissen B, Van Roost D, Achten E, Ritter P, Marinazzo D. Modeling Brain Dynamics in Brain Tumor Patients Using the Virtual Brain. eNeuro. 2018 Jun 4;5(3):ENEURO.0083-18.2018. doi: 10.1523/ENEURO.0083-18.2018. PMID: 29911173; PMCID: PMC6001263.

and

Aerts H, Schirner M, Dhollander T, Jeurissen B, Achten E, Van Roost D, Ritter P, Marinazzo D. Modeling brain dynamics after tumor resection using The Virtual Brain. Neuroimage. 2020 Jun;213:116738. doi: 10.1016/j.neuroimage.2020.116738. Epub 2020 Mar 16. PMID: 32194282.

Contact information: Name: Hannelore Aerts & Daniele Marinazzo Email: daniele.marinazzo@ugent.be

Compared to the initial database, 6 patients were excluded: 2 because of glioma grade 4, 3 because of subtentorial tumor, 1 because of absence of MRI data (subdural grid).

Of all subjects the following data were acquired: - T1w MPRAGE anatomical scan (anat) - resting-state fMRI (func) - multi-shell HARDI diffusion-weighted MRI (dwi, acq=AP) - short DWI with reverse phase encoding directions (dwi, acq=PA) - cognitive assessment using the Cambridge Neuropsychological Test Automated Battery (CANTAB): MOT, RVP, RTI, SSP & SOC - questionnaires assessing demographic information, lifestyle habits & emotional functioning

The "derivatives" folder contains

  • tumor masks, obtained with a combination of manual delineation and disconnectome
  • time series, structural and functional connectivity matrices, and resting state HRF for each ROI. The structural connectivity (SC) is derived with the TVB pipeline (https://github.com/BrainModes/TVB-empirical-data-pipeline) with manual segmentation when necessary. The regions are according to the Desikan-Killiany atlas. The resting state HRF is obtained with the toolbox described here Wu GR, Colenbier N, Van Den Bossche S, Clauw K, Johri A, Tandon M, Marinazzo D. rsHRF: A toolbox for resting-state HRF estimation and deconvolution. Neuroimage. 2021 Dec 1;244:118591. doi: 10.1016/j.neuroimage.2021.118591. Epub 2021 Sep 21. PMID: 34560269.

A companion dataset, containing the postoperatory data, is accessible at https://openneuro.org/datasets/ds002080

Comments

Please sign in to contribute to the discussion.
By aertshannelore@gmail.com - almost 3 years ago
Snapshot created with DOI.