Multisubject, multimodal face processing

uploaded by Richard Henson on 2018-03-30 - over 3 years ago
last modified on 2018-08-25 - about 3 years ago
authored by Wakeman, DG, Henson, RN
2073325146
We found 5 Warnings in your dataset. You are not required to fix warnings, but doing so will make your dataset more BIDS compliant.

/sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-01_bold.nii.gz

You should define 'PhaseEncodingDirection' for this file. If you don't provide this information field map correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-01/sub-01_bold.json, /sub-01/sub-01_task-facerecognition_bold.json, /sub-01/ses-mri/sub-01_ses-mri_bold.json, /sub-01/ses-mri/sub-01_ses-mri_task-facerecognition_bold.json, /sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-01_bold.json

/sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-02_bold.nii.gz

You should define 'PhaseEncodingDirection' for this file. If you don't provide this information field map correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-01/sub-01_bold.json, /sub-01/sub-01_task-facerecognition_bold.json, /sub-01/ses-mri/sub-01_ses-mri_bold.json, /sub-01/ses-mri/sub-01_ses-mri_task-facerecognition_bold.json, /sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-02_bold.json

/sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-03_bold.nii.gz

You should define 'PhaseEncodingDirection' for this file. If you don't provide this information field map correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-01/sub-01_bold.json, /sub-01/sub-01_task-facerecognition_bold.json, /sub-01/ses-mri/sub-01_ses-mri_bold.json, /sub-01/ses-mri/sub-01_ses-mri_task-facerecognition_bold.json, /sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-03_bold.json

/sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-04_bold.nii.gz

You should define 'PhaseEncodingDirection' for this file. If you don't provide this information field map correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-01/sub-01_bold.json, /sub-01/sub-01_task-facerecognition_bold.json, /sub-01/ses-mri/sub-01_ses-mri_bold.json, /sub-01/ses-mri/sub-01_ses-mri_task-facerecognition_bold.json, /sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-04_bold.json

/sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-05_bold.nii.gz

You should define 'PhaseEncodingDirection' for this file. If you don't provide this information field map correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-01/sub-01_bold.json, /sub-01/sub-01_task-facerecognition_bold.json, /sub-01/ses-mri/sub-01_ses-mri_bold.json, /sub-01/ses-mri/sub-01_ses-mri_task-facerecognition_bold.json, /sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-05_bold.json

/sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-06_bold.nii.gz

You should define 'PhaseEncodingDirection' for this file. If you don't provide this information field map correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-01/sub-01_bold.json, /sub-01/sub-01_task-facerecognition_bold.json, /sub-01/ses-mri/sub-01_ses-mri_bold.json, /sub-01/ses-mri/sub-01_ses-mri_task-facerecognition_bold.json, /sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-06_bold.json

/sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-07_bold.nii.gz

You should define 'PhaseEncodingDirection' for this file. If you don't provide this information field map correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-01/sub-01_bold.json, /sub-01/sub-01_task-facerecognition_bold.json, /sub-01/ses-mri/sub-01_ses-mri_bold.json, /sub-01/ses-mri/sub-01_ses-mri_task-facerecognition_bold.json, /sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-07_bold.json

/sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-08_bold.nii.gz

You should define 'PhaseEncodingDirection' for this file. If you don't provide this information field map correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-01/sub-01_bold.json, /sub-01/sub-01_task-facerecognition_bold.json, /sub-01/ses-mri/sub-01_ses-mri_bold.json, /sub-01/ses-mri/sub-01_ses-mri_task-facerecognition_bold.json, /sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-08_bold.json

/sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-09_bold.nii.gz

You should define 'PhaseEncodingDirection' for this file. If you don't provide this information field map correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-01/sub-01_bold.json, /sub-01/sub-01_task-facerecognition_bold.json, /sub-01/ses-mri/sub-01_ses-mri_bold.json, /sub-01/ses-mri/sub-01_ses-mri_task-facerecognition_bold.json, /sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-09_bold.json

/sub-02/ses-mri/func/sub-02_ses-mri_task-facerecognition_run-01_bold.nii.gz

You should define 'PhaseEncodingDirection' for this file. If you don't provide this information field map correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-02/sub-02_bold.json, /sub-02/sub-02_task-facerecognition_bold.json, /sub-02/ses-mri/sub-02_ses-mri_bold.json, /sub-02/ses-mri/sub-02_ses-mri_task-facerecognition_bold.json, /sub-02/ses-mri/func/sub-02_ses-mri_task-facerecognition_run-01_bold.json

and 134 more files

/sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-01_bold.nii.gz

You should define 'EffectiveEchoSpacing' for this file. If you don't provide this information field map correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-01/sub-01_bold.json, /sub-01/sub-01_task-facerecognition_bold.json, /sub-01/ses-mri/sub-01_ses-mri_bold.json, /sub-01/ses-mri/sub-01_ses-mri_task-facerecognition_bold.json, /sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-01_bold.json

/sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-02_bold.nii.gz

You should define 'EffectiveEchoSpacing' for this file. If you don't provide this information field map correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-01/sub-01_bold.json, /sub-01/sub-01_task-facerecognition_bold.json, /sub-01/ses-mri/sub-01_ses-mri_bold.json, /sub-01/ses-mri/sub-01_ses-mri_task-facerecognition_bold.json, /sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-02_bold.json

/sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-03_bold.nii.gz

You should define 'EffectiveEchoSpacing' for this file. If you don't provide this information field map correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-01/sub-01_bold.json, /sub-01/sub-01_task-facerecognition_bold.json, /sub-01/ses-mri/sub-01_ses-mri_bold.json, /sub-01/ses-mri/sub-01_ses-mri_task-facerecognition_bold.json, /sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-03_bold.json

/sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-04_bold.nii.gz

You should define 'EffectiveEchoSpacing' for this file. If you don't provide this information field map correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-01/sub-01_bold.json, /sub-01/sub-01_task-facerecognition_bold.json, /sub-01/ses-mri/sub-01_ses-mri_bold.json, /sub-01/ses-mri/sub-01_ses-mri_task-facerecognition_bold.json, /sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-04_bold.json

/sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-05_bold.nii.gz

You should define 'EffectiveEchoSpacing' for this file. If you don't provide this information field map correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-01/sub-01_bold.json, /sub-01/sub-01_task-facerecognition_bold.json, /sub-01/ses-mri/sub-01_ses-mri_bold.json, /sub-01/ses-mri/sub-01_ses-mri_task-facerecognition_bold.json, /sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-05_bold.json

/sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-06_bold.nii.gz

You should define 'EffectiveEchoSpacing' for this file. If you don't provide this information field map correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-01/sub-01_bold.json, /sub-01/sub-01_task-facerecognition_bold.json, /sub-01/ses-mri/sub-01_ses-mri_bold.json, /sub-01/ses-mri/sub-01_ses-mri_task-facerecognition_bold.json, /sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-06_bold.json

/sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-07_bold.nii.gz

You should define 'EffectiveEchoSpacing' for this file. If you don't provide this information field map correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-01/sub-01_bold.json, /sub-01/sub-01_task-facerecognition_bold.json, /sub-01/ses-mri/sub-01_ses-mri_bold.json, /sub-01/ses-mri/sub-01_ses-mri_task-facerecognition_bold.json, /sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-07_bold.json

/sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-08_bold.nii.gz

You should define 'EffectiveEchoSpacing' for this file. If you don't provide this information field map correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-01/sub-01_bold.json, /sub-01/sub-01_task-facerecognition_bold.json, /sub-01/ses-mri/sub-01_ses-mri_bold.json, /sub-01/ses-mri/sub-01_ses-mri_task-facerecognition_bold.json, /sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-08_bold.json

/sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-09_bold.nii.gz

You should define 'EffectiveEchoSpacing' for this file. If you don't provide this information field map correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-01/sub-01_bold.json, /sub-01/sub-01_task-facerecognition_bold.json, /sub-01/ses-mri/sub-01_ses-mri_bold.json, /sub-01/ses-mri/sub-01_ses-mri_task-facerecognition_bold.json, /sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-09_bold.json

/sub-02/ses-mri/func/sub-02_ses-mri_task-facerecognition_run-01_bold.nii.gz

You should define 'EffectiveEchoSpacing' for this file. If you don't provide this information field map correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-02/sub-02_bold.json, /sub-02/sub-02_task-facerecognition_bold.json, /sub-02/ses-mri/sub-02_ses-mri_bold.json, /sub-02/ses-mri/sub-02_ses-mri_task-facerecognition_bold.json, /sub-02/ses-mri/func/sub-02_ses-mri_task-facerecognition_run-01_bold.json

and 134 more files

/sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-01_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-01/sub-01_bold.json, /sub-01/sub-01_task-facerecognition_bold.json, /sub-01/ses-mri/sub-01_ses-mri_bold.json, /sub-01/ses-mri/sub-01_ses-mri_task-facerecognition_bold.json, /sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-01_bold.json

/sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-02_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-01/sub-01_bold.json, /sub-01/sub-01_task-facerecognition_bold.json, /sub-01/ses-mri/sub-01_ses-mri_bold.json, /sub-01/ses-mri/sub-01_ses-mri_task-facerecognition_bold.json, /sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-02_bold.json

/sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-03_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-01/sub-01_bold.json, /sub-01/sub-01_task-facerecognition_bold.json, /sub-01/ses-mri/sub-01_ses-mri_bold.json, /sub-01/ses-mri/sub-01_ses-mri_task-facerecognition_bold.json, /sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-03_bold.json

/sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-04_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-01/sub-01_bold.json, /sub-01/sub-01_task-facerecognition_bold.json, /sub-01/ses-mri/sub-01_ses-mri_bold.json, /sub-01/ses-mri/sub-01_ses-mri_task-facerecognition_bold.json, /sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-04_bold.json

/sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-05_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-01/sub-01_bold.json, /sub-01/sub-01_task-facerecognition_bold.json, /sub-01/ses-mri/sub-01_ses-mri_bold.json, /sub-01/ses-mri/sub-01_ses-mri_task-facerecognition_bold.json, /sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-05_bold.json

/sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-06_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-01/sub-01_bold.json, /sub-01/sub-01_task-facerecognition_bold.json, /sub-01/ses-mri/sub-01_ses-mri_bold.json, /sub-01/ses-mri/sub-01_ses-mri_task-facerecognition_bold.json, /sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-06_bold.json

/sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-07_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-01/sub-01_bold.json, /sub-01/sub-01_task-facerecognition_bold.json, /sub-01/ses-mri/sub-01_ses-mri_bold.json, /sub-01/ses-mri/sub-01_ses-mri_task-facerecognition_bold.json, /sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-07_bold.json

/sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-08_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-01/sub-01_bold.json, /sub-01/sub-01_task-facerecognition_bold.json, /sub-01/ses-mri/sub-01_ses-mri_bold.json, /sub-01/ses-mri/sub-01_ses-mri_task-facerecognition_bold.json, /sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-08_bold.json

/sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-09_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-01/sub-01_bold.json, /sub-01/sub-01_task-facerecognition_bold.json, /sub-01/ses-mri/sub-01_ses-mri_bold.json, /sub-01/ses-mri/sub-01_ses-mri_task-facerecognition_bold.json, /sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-09_bold.json

/sub-02/ses-mri/func/sub-02_ses-mri_task-facerecognition_run-01_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-02/sub-02_bold.json, /sub-02/sub-02_task-facerecognition_bold.json, /sub-02/ses-mri/sub-02_ses-mri_bold.json, /sub-02/ses-mri/sub-02_ses-mri_task-facerecognition_bold.json, /sub-02/ses-mri/func/sub-02_ses-mri_task-facerecognition_run-01_bold.json

and 134 more files

/sub-01/ses-20090409/meg/sub-01_ses-20090409_task-noise_meg.fif

This file is missing for subject sub-01, but is present for at least one other subject.

/sub-01/ses-20090409/sub-01_ses-20090409_scans.tsv

This file is missing for subject sub-01, but is present for at least one other subject.

/sub-01/ses-20090506/meg/sub-01_ses-20090506_task-noise_meg.fif

This file is missing for subject sub-01, but is present for at least one other subject.

/sub-01/ses-20090506/sub-01_ses-20090506_scans.tsv

This file is missing for subject sub-01, but is present for at least one other subject.

/sub-01/ses-20090511/meg/sub-01_ses-20090511_task-noise_meg.fif

This file is missing for subject sub-01, but is present for at least one other subject.

/sub-01/ses-20090511/sub-01_ses-20090511_scans.tsv

This file is missing for subject sub-01, but is present for at least one other subject.

/sub-01/ses-20090515/meg/sub-01_ses-20090515_task-noise_meg.fif

This file is missing for subject sub-01, but is present for at least one other subject.

/sub-01/ses-20090515/sub-01_ses-20090515_scans.tsv

This file is missing for subject sub-01, but is present for at least one other subject.

/sub-01/ses-20090518/meg/sub-01_ses-20090518_task-noise_meg.fif

This file is missing for subject sub-01, but is present for at least one other subject.

/sub-01/ses-20090518/sub-01_ses-20090518_scans.tsv

This file is missing for subject sub-01, but is present for at least one other subject.

and 310 more files

/sub-02/ses-mri/fmap/sub-02_ses-mri_magnitude1.nii

The most common resolution is: 3.00mm x 3.00mm x 3.75mm, This file has the resolution: 3.00mm x 3.00mm x 3.90mm.

/sub-02/ses-mri/fmap/sub-02_ses-mri_magnitude2.nii

The most common resolution is: 3.00mm x 3.00mm x 3.75mm, This file has the resolution: 3.00mm x 3.00mm x 3.90mm.

/sub-02/ses-mri/fmap/sub-02_ses-mri_phasediff.nii

The most common resolution is: 3.00mm x 3.00mm x 3.75mm, This file has the resolution: 3.00mm x 3.00mm x 3.90mm.

/sub-02/ses-mri/func/sub-02_ses-mri_task-facerecognition_run-01_bold.nii.gz

The most common resolution is: 3.00mm x 3.00mm x 3.75mm x 2.00s, This file has the resolution: 3.00mm x 3.00mm x 3.90mm x 2.00s.

/sub-02/ses-mri/func/sub-02_ses-mri_task-facerecognition_run-02_bold.nii.gz

The most common resolution is: 3.00mm x 3.00mm x 3.75mm x 2.00s, This file has the resolution: 3.00mm x 3.00mm x 3.90mm x 2.00s.

/sub-02/ses-mri/func/sub-02_ses-mri_task-facerecognition_run-03_bold.nii.gz

The most common resolution is: 3.00mm x 3.00mm x 3.75mm x 2.00s, This file has the resolution: 3.00mm x 3.00mm x 3.90mm x 2.00s.

/sub-02/ses-mri/func/sub-02_ses-mri_task-facerecognition_run-04_bold.nii.gz

The most common resolution is: 3.00mm x 3.00mm x 3.75mm x 2.00s, This file has the resolution: 3.00mm x 3.00mm x 3.90mm x 2.00s.

/sub-02/ses-mri/func/sub-02_ses-mri_task-facerecognition_run-05_bold.nii.gz

The most common resolution is: 3.00mm x 3.00mm x 3.75mm x 2.00s, This file has the resolution: 3.00mm x 3.00mm x 3.90mm x 2.00s.

/sub-02/ses-mri/func/sub-02_ses-mri_task-facerecognition_run-06_bold.nii.gz

The most common resolution is: 3.00mm x 3.00mm x 3.75mm x 2.00s, This file has the resolution: 3.00mm x 3.00mm x 3.90mm x 2.00s.

/sub-02/ses-mri/func/sub-02_ses-mri_task-facerecognition_run-07_bold.nii.gz

The most common resolution is: 3.00mm x 3.00mm x 3.75mm x 2.00s, This file has the resolution: 3.00mm x 3.00mm x 3.90mm x 2.00s.

and 80 more files

OpenNeuro Accession Number: ds000117
Files: 20569, Size: 30.13GB, Subjects: 17, Sessions: 10
Available Tasks: facerecognition
Available Modalities: T1w, dwi, bold, fieldmap

README

This dataset was obtained from the OpenNeuro project (https://www.openneuro.org). Accession #: ds000117

The same dataset is also available here: ftp://ftp.mrc-cbu.cam.ac.uk/personal/rik.henson/wakemandg_hensonrn/, but in a non-BIDS format (which may be easier to download by subject rather than by modality)

Note that it is a subset of the data available on OpenfMRI (http://www.openfmri.org; Accession #: ds000117).

Description: Multi-subject, multi-modal (sMRI+fMRI+MEG+EEG) neuroimaging dataset on face processing

Please cite the following reference if you use these data:

 Wakeman, D.G. & Henson, R.N. (2015). A multi-subject, multi-modal human neuroimaging dataset. Sci. Data 2:150001 doi: 10.1038/sdata.2015.1

The data have been used in several publications including, for example:

Henson, R.N., Wakeman, D.G., Litvak, V. & Friston, K.J. (2011). A Parametric Empirical Bayesian framework for the EEG/MEG inverse problem: generative models for multisubject and multimodal integration. Frontiers in Human Neuroscience, 5, 76, 1-16.

Chapter 42 of the SPM12 manual (http://www.fil.ion.ucl.ac.uk/spm/doc/manual.pdf)

(see ftp://ftp.mrc-cbu.cam.ac.uk/personal/rik.henson/wakemandg_hensonrn/Publications for full list), as well as the BioMag2010 data competition and the Kaggle competition: https://www.kaggle.com/c/decoding-the-human-brain

==================================================================================

func/ ----- Unlike in v1-v3 of this dataset, the first two (dummy) volumes have now been removed (as stated in *.json), so event onset times correctly refer to t=0 at start of third volume

meg/ ---- Three anatomical fiducials were digitized for aligning the MEG with the MRI: the nasion (lowest depression between the eyes) and the left and right ears (lowest depression between the tragus and the helix, above the tragus). This procedure is illustrated here: http://neuroimage.usc.edu/brainstorm/CoordinateSystems#Subject_Coordinate_System_.28SCS_.2F_CTF.29 and in task-facerecognition_fidinfo.pdf

The following triggers are included in the .fif files and are also used in the “trigger” column of the meg and bold events files:

Trigger Label Simplified Label

5 Initial Famous Face FAMOUS 6 Immediate Repeat Famous Face FAMOUS 7 Delayed Repeat Famous Face FAMOUS 13 Initial Unfamiliar Face UNFAMILIAR 14 Immediate Repeat Unfamiliar Face UNFAMILIAR 15 Delayed Repeat Unfamiliar Face UNFAMILIAR 17 Initial Scrambled Face SCRAMBLED 18 Immediate Repeat Scrambled Face SCRAMBLED 19 Delayed Repeat Scrambled Face SCRAMBLED

stimuli/meg/ ------------ The .bmp files correspond to those described in the text. There are 6 additional images in this directory, which were used in the practice experiment to familiarize participants with the task.

stimuli/mri/ ------------ The .bmp files correspond to those described in the text.

Defacing -------- Defacing of MPRAGE T1 images was performed by the submitter. A subset of subjects have given consent for non-defaced versions to be shared - in which case, please contact rik.henson@mrc-cbu.cam.ac.uk.

Quality Control --------------- Mriqc was run on the dataset. Results are located in derivatives/mriqc. Learn more about it here: https://mriqc.readthedocs.io/en/latest/

Known Issues ------------ N/A

Authors

  • Wakeman, DG
  • Henson, RN

Dataset DOI

10.18112/openneuro.ds000117.v1.0.4

License

CC0

Acknowledgements

This work was supported by the UK Medical Research Council (SUAG/010 RG91365) and Elekta Ltd. We would also like to acknowledge the contribution of Andre van der Kouwe and the A.A. Martinos Center for Biomedical Imaging (MGH) for providing the Multi-Echo FLASH sequences used in this work.

How to Acknowledge

Cite this paper: https://www.ncbi.nlm.nih.gov/pubmed/25977808 and consider including the following message: 'This data was obtained from the OpenNeuro database. Its accession number is ds000117'

Funding

  • UK Medical Research Council (SUAG/010 RG91365), Elekta Ltd.

References and Links

Ethics Approvals

How To Cite

Copy
Wakeman, DG and Henson, RN (2018). Multisubject, multimodal face processing. OpenNeuro. [Dataset] doi: 10.18112/openneuro.ds000117.v1.0.4
More citation info

Multisubject, multimodal face processing

uploaded by Richard Henson on 2018-03-30 - over 3 years ago
last modified on 2018-08-25 - about 3 years ago
authored by Wakeman, DG, Henson, RN
2073325146

OpenNeuro Accession Number: ds000117
Files: 20569, Size: 30.13GB, Subjects: 17, Sessions: 10
Available Tasks: facerecognition
Available Modalities: T1w, dwi, bold, fieldmap

README

This dataset was obtained from the OpenNeuro project (https://www.openneuro.org). Accession #: ds000117

The same dataset is also available here: ftp://ftp.mrc-cbu.cam.ac.uk/personal/rik.henson/wakemandg_hensonrn/, but in a non-BIDS format (which may be easier to download by subject rather than by modality)

Note that it is a subset of the data available on OpenfMRI (http://www.openfmri.org; Accession #: ds000117).

Description: Multi-subject, multi-modal (sMRI+fMRI+MEG+EEG) neuroimaging dataset on face processing

Please cite the following reference if you use these data:

 Wakeman, D.G. & Henson, R.N. (2015). A multi-subject, multi-modal human neuroimaging dataset. Sci. Data 2:150001 doi: 10.1038/sdata.2015.1

The data have been used in several publications including, for example:

Henson, R.N., Wakeman, D.G., Litvak, V. & Friston, K.J. (2011). A Parametric Empirical Bayesian framework for the EEG/MEG inverse problem: generative models for multisubject and multimodal integration. Frontiers in Human Neuroscience, 5, 76, 1-16.

Chapter 42 of the SPM12 manual (http://www.fil.ion.ucl.ac.uk/spm/doc/manual.pdf)

(see ftp://ftp.mrc-cbu.cam.ac.uk/personal/rik.henson/wakemandg_hensonrn/Publications for full list), as well as the BioMag2010 data competition and the Kaggle competition: https://www.kaggle.com/c/decoding-the-human-brain

==================================================================================

func/ ----- Unlike in v1-v3 of this dataset, the first two (dummy) volumes have now been removed (as stated in *.json), so event onset times correctly refer to t=0 at start of third volume

meg/ ---- Three anatomical fiducials were digitized for aligning the MEG with the MRI: the nasion (lowest depression between the eyes) and the left and right ears (lowest depression between the tragus and the helix, above the tragus). This procedure is illustrated here: http://neuroimage.usc.edu/brainstorm/CoordinateSystems#Subject_Coordinate_System_.28SCS_.2F_CTF.29 and in task-facerecognition_fidinfo.pdf

The following triggers are included in the .fif files and are also used in the “trigger” column of the meg and bold events files:

Trigger Label Simplified Label

5 Initial Famous Face FAMOUS 6 Immediate Repeat Famous Face FAMOUS 7 Delayed Repeat Famous Face FAMOUS 13 Initial Unfamiliar Face UNFAMILIAR 14 Immediate Repeat Unfamiliar Face UNFAMILIAR 15 Delayed Repeat Unfamiliar Face UNFAMILIAR 17 Initial Scrambled Face SCRAMBLED 18 Immediate Repeat Scrambled Face SCRAMBLED 19 Delayed Repeat Scrambled Face SCRAMBLED

stimuli/meg/ ------------ The .bmp files correspond to those described in the text. There are 6 additional images in this directory, which were used in the practice experiment to familiarize participants with the task.

stimuli/mri/ ------------ The .bmp files correspond to those described in the text.

Defacing -------- Defacing of MPRAGE T1 images was performed by the submitter. A subset of subjects have given consent for non-defaced versions to be shared - in which case, please contact rik.henson@mrc-cbu.cam.ac.uk.

Quality Control --------------- Mriqc was run on the dataset. Results are located in derivatives/mriqc. Learn more about it here: https://mriqc.readthedocs.io/en/latest/

Known Issues ------------ N/A

Authors

  • Wakeman, DG
  • Henson, RN

Dataset DOI

10.18112/openneuro.ds000117.v1.0.4

License

CC0

Acknowledgements

This work was supported by the UK Medical Research Council (SUAG/010 RG91365) and Elekta Ltd. We would also like to acknowledge the contribution of Andre van der Kouwe and the A.A. Martinos Center for Biomedical Imaging (MGH) for providing the Multi-Echo FLASH sequences used in this work.

How to Acknowledge

Cite this paper: https://www.ncbi.nlm.nih.gov/pubmed/25977808 and consider including the following message: 'This data was obtained from the OpenNeuro database. Its accession number is ds000117'

Funding

  • UK Medical Research Council (SUAG/010 RG91365), Elekta Ltd.

References and Links

Ethics Approvals

How To Cite

Copy
Wakeman, DG and Henson, RN (2018). Multisubject, multimodal face processing. OpenNeuro. [Dataset] doi: 10.18112/openneuro.ds000117.v1.0.4
More citation info

Dataset File Tree

Git Hash: 42575b8 

BIDS Validation

We found 5 Warnings in your dataset. You are not required to fix warnings, but doing so will make your dataset more BIDS compliant.

/sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-01_bold.nii.gz

You should define 'PhaseEncodingDirection' for this file. If you don't provide this information field map correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-01/sub-01_bold.json, /sub-01/sub-01_task-facerecognition_bold.json, /sub-01/ses-mri/sub-01_ses-mri_bold.json, /sub-01/ses-mri/sub-01_ses-mri_task-facerecognition_bold.json, /sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-01_bold.json

/sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-02_bold.nii.gz

You should define 'PhaseEncodingDirection' for this file. If you don't provide this information field map correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-01/sub-01_bold.json, /sub-01/sub-01_task-facerecognition_bold.json, /sub-01/ses-mri/sub-01_ses-mri_bold.json, /sub-01/ses-mri/sub-01_ses-mri_task-facerecognition_bold.json, /sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-02_bold.json

/sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-03_bold.nii.gz

You should define 'PhaseEncodingDirection' for this file. If you don't provide this information field map correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-01/sub-01_bold.json, /sub-01/sub-01_task-facerecognition_bold.json, /sub-01/ses-mri/sub-01_ses-mri_bold.json, /sub-01/ses-mri/sub-01_ses-mri_task-facerecognition_bold.json, /sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-03_bold.json

/sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-04_bold.nii.gz

You should define 'PhaseEncodingDirection' for this file. If you don't provide this information field map correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-01/sub-01_bold.json, /sub-01/sub-01_task-facerecognition_bold.json, /sub-01/ses-mri/sub-01_ses-mri_bold.json, /sub-01/ses-mri/sub-01_ses-mri_task-facerecognition_bold.json, /sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-04_bold.json

/sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-05_bold.nii.gz

You should define 'PhaseEncodingDirection' for this file. If you don't provide this information field map correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-01/sub-01_bold.json, /sub-01/sub-01_task-facerecognition_bold.json, /sub-01/ses-mri/sub-01_ses-mri_bold.json, /sub-01/ses-mri/sub-01_ses-mri_task-facerecognition_bold.json, /sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-05_bold.json

/sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-06_bold.nii.gz

You should define 'PhaseEncodingDirection' for this file. If you don't provide this information field map correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-01/sub-01_bold.json, /sub-01/sub-01_task-facerecognition_bold.json, /sub-01/ses-mri/sub-01_ses-mri_bold.json, /sub-01/ses-mri/sub-01_ses-mri_task-facerecognition_bold.json, /sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-06_bold.json

/sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-07_bold.nii.gz

You should define 'PhaseEncodingDirection' for this file. If you don't provide this information field map correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-01/sub-01_bold.json, /sub-01/sub-01_task-facerecognition_bold.json, /sub-01/ses-mri/sub-01_ses-mri_bold.json, /sub-01/ses-mri/sub-01_ses-mri_task-facerecognition_bold.json, /sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-07_bold.json

/sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-08_bold.nii.gz

You should define 'PhaseEncodingDirection' for this file. If you don't provide this information field map correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-01/sub-01_bold.json, /sub-01/sub-01_task-facerecognition_bold.json, /sub-01/ses-mri/sub-01_ses-mri_bold.json, /sub-01/ses-mri/sub-01_ses-mri_task-facerecognition_bold.json, /sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-08_bold.json

/sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-09_bold.nii.gz

You should define 'PhaseEncodingDirection' for this file. If you don't provide this information field map correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-01/sub-01_bold.json, /sub-01/sub-01_task-facerecognition_bold.json, /sub-01/ses-mri/sub-01_ses-mri_bold.json, /sub-01/ses-mri/sub-01_ses-mri_task-facerecognition_bold.json, /sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-09_bold.json

/sub-02/ses-mri/func/sub-02_ses-mri_task-facerecognition_run-01_bold.nii.gz

You should define 'PhaseEncodingDirection' for this file. If you don't provide this information field map correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-02/sub-02_bold.json, /sub-02/sub-02_task-facerecognition_bold.json, /sub-02/ses-mri/sub-02_ses-mri_bold.json, /sub-02/ses-mri/sub-02_ses-mri_task-facerecognition_bold.json, /sub-02/ses-mri/func/sub-02_ses-mri_task-facerecognition_run-01_bold.json

and 134 more files

/sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-01_bold.nii.gz

You should define 'EffectiveEchoSpacing' for this file. If you don't provide this information field map correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-01/sub-01_bold.json, /sub-01/sub-01_task-facerecognition_bold.json, /sub-01/ses-mri/sub-01_ses-mri_bold.json, /sub-01/ses-mri/sub-01_ses-mri_task-facerecognition_bold.json, /sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-01_bold.json

/sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-02_bold.nii.gz

You should define 'EffectiveEchoSpacing' for this file. If you don't provide this information field map correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-01/sub-01_bold.json, /sub-01/sub-01_task-facerecognition_bold.json, /sub-01/ses-mri/sub-01_ses-mri_bold.json, /sub-01/ses-mri/sub-01_ses-mri_task-facerecognition_bold.json, /sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-02_bold.json

/sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-03_bold.nii.gz

You should define 'EffectiveEchoSpacing' for this file. If you don't provide this information field map correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-01/sub-01_bold.json, /sub-01/sub-01_task-facerecognition_bold.json, /sub-01/ses-mri/sub-01_ses-mri_bold.json, /sub-01/ses-mri/sub-01_ses-mri_task-facerecognition_bold.json, /sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-03_bold.json

/sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-04_bold.nii.gz

You should define 'EffectiveEchoSpacing' for this file. If you don't provide this information field map correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-01/sub-01_bold.json, /sub-01/sub-01_task-facerecognition_bold.json, /sub-01/ses-mri/sub-01_ses-mri_bold.json, /sub-01/ses-mri/sub-01_ses-mri_task-facerecognition_bold.json, /sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-04_bold.json

/sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-05_bold.nii.gz

You should define 'EffectiveEchoSpacing' for this file. If you don't provide this information field map correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-01/sub-01_bold.json, /sub-01/sub-01_task-facerecognition_bold.json, /sub-01/ses-mri/sub-01_ses-mri_bold.json, /sub-01/ses-mri/sub-01_ses-mri_task-facerecognition_bold.json, /sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-05_bold.json

/sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-06_bold.nii.gz

You should define 'EffectiveEchoSpacing' for this file. If you don't provide this information field map correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-01/sub-01_bold.json, /sub-01/sub-01_task-facerecognition_bold.json, /sub-01/ses-mri/sub-01_ses-mri_bold.json, /sub-01/ses-mri/sub-01_ses-mri_task-facerecognition_bold.json, /sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-06_bold.json

/sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-07_bold.nii.gz

You should define 'EffectiveEchoSpacing' for this file. If you don't provide this information field map correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-01/sub-01_bold.json, /sub-01/sub-01_task-facerecognition_bold.json, /sub-01/ses-mri/sub-01_ses-mri_bold.json, /sub-01/ses-mri/sub-01_ses-mri_task-facerecognition_bold.json, /sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-07_bold.json

/sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-08_bold.nii.gz

You should define 'EffectiveEchoSpacing' for this file. If you don't provide this information field map correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-01/sub-01_bold.json, /sub-01/sub-01_task-facerecognition_bold.json, /sub-01/ses-mri/sub-01_ses-mri_bold.json, /sub-01/ses-mri/sub-01_ses-mri_task-facerecognition_bold.json, /sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-08_bold.json

/sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-09_bold.nii.gz

You should define 'EffectiveEchoSpacing' for this file. If you don't provide this information field map correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-01/sub-01_bold.json, /sub-01/sub-01_task-facerecognition_bold.json, /sub-01/ses-mri/sub-01_ses-mri_bold.json, /sub-01/ses-mri/sub-01_ses-mri_task-facerecognition_bold.json, /sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-09_bold.json

/sub-02/ses-mri/func/sub-02_ses-mri_task-facerecognition_run-01_bold.nii.gz

You should define 'EffectiveEchoSpacing' for this file. If you don't provide this information field map correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-02/sub-02_bold.json, /sub-02/sub-02_task-facerecognition_bold.json, /sub-02/ses-mri/sub-02_ses-mri_bold.json, /sub-02/ses-mri/sub-02_ses-mri_task-facerecognition_bold.json, /sub-02/ses-mri/func/sub-02_ses-mri_task-facerecognition_run-01_bold.json

and 134 more files

/sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-01_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-01/sub-01_bold.json, /sub-01/sub-01_task-facerecognition_bold.json, /sub-01/ses-mri/sub-01_ses-mri_bold.json, /sub-01/ses-mri/sub-01_ses-mri_task-facerecognition_bold.json, /sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-01_bold.json

/sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-02_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-01/sub-01_bold.json, /sub-01/sub-01_task-facerecognition_bold.json, /sub-01/ses-mri/sub-01_ses-mri_bold.json, /sub-01/ses-mri/sub-01_ses-mri_task-facerecognition_bold.json, /sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-02_bold.json

/sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-03_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-01/sub-01_bold.json, /sub-01/sub-01_task-facerecognition_bold.json, /sub-01/ses-mri/sub-01_ses-mri_bold.json, /sub-01/ses-mri/sub-01_ses-mri_task-facerecognition_bold.json, /sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-03_bold.json

/sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-04_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-01/sub-01_bold.json, /sub-01/sub-01_task-facerecognition_bold.json, /sub-01/ses-mri/sub-01_ses-mri_bold.json, /sub-01/ses-mri/sub-01_ses-mri_task-facerecognition_bold.json, /sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-04_bold.json

/sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-05_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-01/sub-01_bold.json, /sub-01/sub-01_task-facerecognition_bold.json, /sub-01/ses-mri/sub-01_ses-mri_bold.json, /sub-01/ses-mri/sub-01_ses-mri_task-facerecognition_bold.json, /sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-05_bold.json

/sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-06_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-01/sub-01_bold.json, /sub-01/sub-01_task-facerecognition_bold.json, /sub-01/ses-mri/sub-01_ses-mri_bold.json, /sub-01/ses-mri/sub-01_ses-mri_task-facerecognition_bold.json, /sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-06_bold.json

/sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-07_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-01/sub-01_bold.json, /sub-01/sub-01_task-facerecognition_bold.json, /sub-01/ses-mri/sub-01_ses-mri_bold.json, /sub-01/ses-mri/sub-01_ses-mri_task-facerecognition_bold.json, /sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-07_bold.json

/sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-08_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-01/sub-01_bold.json, /sub-01/sub-01_task-facerecognition_bold.json, /sub-01/ses-mri/sub-01_ses-mri_bold.json, /sub-01/ses-mri/sub-01_ses-mri_task-facerecognition_bold.json, /sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-08_bold.json

/sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-09_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-01/sub-01_bold.json, /sub-01/sub-01_task-facerecognition_bold.json, /sub-01/ses-mri/sub-01_ses-mri_bold.json, /sub-01/ses-mri/sub-01_ses-mri_task-facerecognition_bold.json, /sub-01/ses-mri/func/sub-01_ses-mri_task-facerecognition_run-09_bold.json

/sub-02/ses-mri/func/sub-02_ses-mri_task-facerecognition_run-01_bold.nii.gz

You should define 'SliceTiming' for this file. If you don't provide this information slice time correction will not be possible. It can be included one of the following locations: /bold.json, /task-facerecognition_bold.json, /sub-02/sub-02_bold.json, /sub-02/sub-02_task-facerecognition_bold.json, /sub-02/ses-mri/sub-02_ses-mri_bold.json, /sub-02/ses-mri/sub-02_ses-mri_task-facerecognition_bold.json, /sub-02/ses-mri/func/sub-02_ses-mri_task-facerecognition_run-01_bold.json

and 134 more files

/sub-01/ses-20090409/meg/sub-01_ses-20090409_task-noise_meg.fif

This file is missing for subject sub-01, but is present for at least one other subject.

/sub-01/ses-20090409/sub-01_ses-20090409_scans.tsv

This file is missing for subject sub-01, but is present for at least one other subject.

/sub-01/ses-20090506/meg/sub-01_ses-20090506_task-noise_meg.fif

This file is missing for subject sub-01, but is present for at least one other subject.

/sub-01/ses-20090506/sub-01_ses-20090506_scans.tsv

This file is missing for subject sub-01, but is present for at least one other subject.

/sub-01/ses-20090511/meg/sub-01_ses-20090511_task-noise_meg.fif

This file is missing for subject sub-01, but is present for at least one other subject.

/sub-01/ses-20090511/sub-01_ses-20090511_scans.tsv

This file is missing for subject sub-01, but is present for at least one other subject.

/sub-01/ses-20090515/meg/sub-01_ses-20090515_task-noise_meg.fif

This file is missing for subject sub-01, but is present for at least one other subject.

/sub-01/ses-20090515/sub-01_ses-20090515_scans.tsv

This file is missing for subject sub-01, but is present for at least one other subject.

/sub-01/ses-20090518/meg/sub-01_ses-20090518_task-noise_meg.fif

This file is missing for subject sub-01, but is present for at least one other subject.

/sub-01/ses-20090518/sub-01_ses-20090518_scans.tsv

This file is missing for subject sub-01, but is present for at least one other subject.

and 310 more files

/sub-02/ses-mri/fmap/sub-02_ses-mri_magnitude1.nii

The most common resolution is: 3.00mm x 3.00mm x 3.75mm, This file has the resolution: 3.00mm x 3.00mm x 3.90mm.

/sub-02/ses-mri/fmap/sub-02_ses-mri_magnitude2.nii

The most common resolution is: 3.00mm x 3.00mm x 3.75mm, This file has the resolution: 3.00mm x 3.00mm x 3.90mm.

/sub-02/ses-mri/fmap/sub-02_ses-mri_phasediff.nii

The most common resolution is: 3.00mm x 3.00mm x 3.75mm, This file has the resolution: 3.00mm x 3.00mm x 3.90mm.

/sub-02/ses-mri/func/sub-02_ses-mri_task-facerecognition_run-01_bold.nii.gz

The most common resolution is: 3.00mm x 3.00mm x 3.75mm x 2.00s, This file has the resolution: 3.00mm x 3.00mm x 3.90mm x 2.00s.

/sub-02/ses-mri/func/sub-02_ses-mri_task-facerecognition_run-02_bold.nii.gz

The most common resolution is: 3.00mm x 3.00mm x 3.75mm x 2.00s, This file has the resolution: 3.00mm x 3.00mm x 3.90mm x 2.00s.

/sub-02/ses-mri/func/sub-02_ses-mri_task-facerecognition_run-03_bold.nii.gz

The most common resolution is: 3.00mm x 3.00mm x 3.75mm x 2.00s, This file has the resolution: 3.00mm x 3.00mm x 3.90mm x 2.00s.

/sub-02/ses-mri/func/sub-02_ses-mri_task-facerecognition_run-04_bold.nii.gz

The most common resolution is: 3.00mm x 3.00mm x 3.75mm x 2.00s, This file has the resolution: 3.00mm x 3.00mm x 3.90mm x 2.00s.

/sub-02/ses-mri/func/sub-02_ses-mri_task-facerecognition_run-05_bold.nii.gz

The most common resolution is: 3.00mm x 3.00mm x 3.75mm x 2.00s, This file has the resolution: 3.00mm x 3.00mm x 3.90mm x 2.00s.

/sub-02/ses-mri/func/sub-02_ses-mri_task-facerecognition_run-06_bold.nii.gz

The most common resolution is: 3.00mm x 3.00mm x 3.75mm x 2.00s, This file has the resolution: 3.00mm x 3.00mm x 3.90mm x 2.00s.

/sub-02/ses-mri/func/sub-02_ses-mri_task-facerecognition_run-07_bold.nii.gz

The most common resolution is: 3.00mm x 3.00mm x 3.75mm x 2.00s, This file has the resolution: 3.00mm x 3.00mm x 3.90mm x 2.00s.

and 80 more files

Dataset File Tree

Git Hash: 42575b8 

Comments

Please sign in to contribute to the discussion.
By psoulos@gmail.com - almost 2 years ago
Hello, I have a couple of questions about using FreeSurfer with version 1.0.3 compared to version 0.1.1 on OpenfMRI. Version 0.1.1 uses the standard FreeSurfer directory structure, and I understand how to use FreeSurfer with this format. I am unsure of how to use FreeSurfer with version 1.0.3.

In Version 0.1.1, I can run `recon-all` on sub001/anatomy/highres001.nii.gz
In Version 1.0.3, should I run `recon-all` on sub-01/ses-mri/anat/sub-01_ses-mri_acq-mprage_T1w.nii.gz?

Is there a recommended way to run `preproc-sess`, `mkanalysis-sess`, and other session level commands using the version 1.0.3 directory structure?

I also noticed that the fMRI stimuli are different between the two versions. The identity of the faces is the same between the two versions, but the actual image of each identity is different. Which image was actually shown to participants?

Thank you,
Paul
By krzysztof.gorgolewski@gmail.com - over 3 years ago
This dataset seems to include an empty file 'derivatives/meg_derivatives/ct_sparse.fif' - was that intentional?
By rik.henson@mrc-cbu.cam.ac.uk - over 3 years ago
Not intentional - an error, sorry - I will upload correct file, plus several other empty placeholder files, eg stimulus files (left over from github filespace limits) - once the S3 version of OpenNeuro is ready, so I can upload them separately, because the dataset is so large that a single upload takes >10 hours and is more prone to interruption.
By rik.henson@mrc-cbu.cam.ac.uk - over 3 years ago
ct_sparse.fif and *.bmp stimulus files now uploaded in v4
By krzysztof.gorgolewski@gmail.com - about 3 years ago
The S3 version of OpenNeuro is ready. You can update your dataset in bulk using a command line client. More details at https://github.com/OpenNeuroOrg/openneuro/tree/master/packages/openneuro-cli
By andrewjanke@gmail.com - almost 2 years ago
Hi there. I just downloaded version 1.0.3 of this dataset using the aws CLI downloader mechanism. There are couple files with weird-looking names beginning with dots and ending in an extra extension that looks like a random sequence of characters.

[~/Downloads/BIDS/ds000117-download]
$ find . -type f -name '.*.*' -exec ls -lh {} \;
-rw-r--r-- 1 janke staff 512K Aug 19 2018 ./derivatives/freesurfer/sub-01/ses-mri/anat/label/.lh.BA.thresh.annot.f3h5wZ
-rw-r--r-- 1 janke staff 239M Nov 26 2018 ./sub-02/ses-meg/meg/.sub-02_ses-meg_task-facerecognition_run-05_meg.fif.Seznkq

They correspond to not-starting-with-a-dot, not-ending-in-a-random-suffix files of similar names.

$ ls -l derivatives/freesurfer/sub-01/ses-mri/anat/label/lh.BA.thresh.annot
-rw-r--r-- 1 janke staff 1097187 Aug 19 2018 derivatives/freesurfer/sub-01/ses-mri/anat/label/lh.BA.thresh.annot
$ ls -l sub-02/ses-meg/meg/sub-02_ses-meg_task-facerecognition_run-05_meg*
-rw-r--r-- 1 janke staff 865455174 Nov 26 2018 sub-02/ses-meg/meg/sub-02_ses-meg_task-facerecognition_run-05_meg.fif

Are these temporary files of some sort that got accidentally included in the dataset? From what I've read of the BIDS specification, it doesn't define any starting-with-dots files like this.
By doyle.andrew@gmail.com - about 2 years ago
This is a great dataset, thanks for sharing!
By effigies@gmail.com - about 3 years ago
"PhaseEncodingDirection" is missing from task-facerecognition_bold.json. This makes fieldmap correction impossible. Is this information recoverable?
By rik.henson@mrc-cbu.cam.ac.uk - almost 3 years ago
Sorry for the delay - I have updated the "task-facerecognition_bold.json" in the root directory, which now includes the "PhaseEncodingDirection" field (which should be inherited by all subjects and runs).

Note there are also many more fields (from dcm2bids), including "SliceTiming" and "EffectiveEchoSpacing" that others have asked for (I'm not sure why BIDS Validator still complains that they are not present, unless Validator does not implement this BIDS inheritance?)

By andrewjanke@gmail.com - almost 2 years ago
Hi there. I just downloaded version 1.0.3 of this dataset using the aws CLI downloader mechanism. There are couple files with weird-looking names beginning with dots and ending in an extra extension that looks like a random sequence of characters.

[~/Downloads/BIDS/ds000117-download]
$ find . -type f -name '.*.*' -exec ls -lh {} \;
-rw-r--r-- 1 janke staff 512K Aug 19 2018 ./derivatives/freesurfer/sub-01/ses-mri/anat/label/.lh.BA.thresh.annot.f3h5wZ
-rw-r--r-- 1 janke staff 239M Nov 26 2018 ./sub-02/ses-meg/meg/.sub-02_ses-meg_task-facerecognition_run-05_meg.fif.Seznkq

They correspond to not-starting-with-a-dot, not-ending-in-a-random-suffix files of similar names.

$ ls -l derivatives/freesurfer/sub-01/ses-mri/anat/label/lh.BA.thresh.annot
-rw-r--r-- 1 janke staff 1097187 Aug 19 2018 derivatives/freesurfer/sub-01/ses-mri/anat/label/lh.BA.thresh.annot
$ ls -l sub-02/ses-meg/meg/sub-02_ses-meg_task-facerecognition_run-05_meg*
-rw-r--r-- 1 janke staff 865455174 Nov 26 2018 sub-02/ses-meg/meg/sub-02_ses-meg_task-facerecognition_run-05_meg.fif

Are these temporary files of some sort that got accidentally included in the dataset? From what I've read of the BIDS specification, it doesn't define any starting-with-dots files like this.
By psoulos@gmail.com - almost 2 years ago
Those look like temporary files from downloading the dataset. I would redownload those specific files just to make sure that you don't end up with a corrupted version.

By dtborek@gmail.com - over 2 years ago
Why version 1.0.3 is 460 gb but 1.0.2 weights 30 gb? Anyway when I use dtatalad it starting downloading dataset that is around 160 gb :(
By doyle.andrew@gmail.com - about 2 years ago
That's probably because datalad reuses the overlap from the 460 gb between the versions, but I can't say for sure!
By neurolang@g.ncu.edu.tw - about 1 year ago
Hi, thank you very much for sharing this dataset!

I have a question about the MEG data (*.fif files). Are the FIF files (including *fif files of each participant and *fif files of empty room data) processed with MaxFilter? Thanks!

All the best,
Kevin Hsu
By neurolang@g.ncu.edu.tw - about 1 year ago
I am very sorry for posting the same message several times. I did not see the post of my comment so I sent this comment for several times... Now I know that the latest message is posted at the bottom of the page. I am very sorry for my mistake!

Kevin Hsu
By rik.henson@mrc-cbu.cam.ac.uk - about 1 year ago
Hi Kevin. The MEG data in the main folders are raw, ie have not been maxfiltered. Maxfiltered versions are in the "derivatives" sub-folder. Best wishes, Rik.
By neurolang@g.ncu.edu.tw - about 1 year ago
Hi Rik, Thank you for explaining the files. I will go for the data in the derivatives sub-folder. All the best, Kevin

By fatemeh.391@gmail.com - about 1 year ago
Many thanks for sharing the dataset. Is it possible please to tell me is there EEG data in this dataset too?
By rik.henson@mrc-cbu.cam.ac.uk - about 1 year ago
Yes, 70 channels of nose-referenced EEG data, recorded simultaneously with the MEG, are part of the channels in the FIF file. Various freeware (eg FieldTrip) can extract them from the FIF files into, eg, Matlab.
By moritz.maschke@merkur.uni-freiburg.de - 4 months ago
I just got a reply from Prof Henson that I'll share: "EEG061 and EEG062 are H+V EOG. EEG063 is ECG. EEG064 is floating noise, ie nothing."
I hope that this is helpful to other users. The noise channel was not mentioned in the paper, which I recommend as a good read. :)
By agathe.senellart@gmail.com - 4 months ago
Hi!
I tried downloading a single file
sub-01_ses-meg_meg_sub-01_ses-meg_task-facerecognition_run-01_meg.fif
But it doesn't seem to work today although I did it a month ago and it worked fine. The file only contains an error message :
{"error": "file not found"}
Do you know what might be happening here ?
Thank you for your help !