# Known Issues

* BIDS validator warns that some stimuli files are not included in events.tsv. This is due to the extra 2 circle figures, which were used to keep participants' attention and remind them to respond timely.
* BIDS validator warns that inconsistent subjects and missing sessions because not all subjects could attend all tasks and all sessions.
* BIDS validator warns that we missed magnitude files. This is due to the fact that we did not collect magnitude images during the fieldmap scan. We only collected phasediff images.
* BIDS validator warns that not all subjects/sessions/runs have the same scanning parameters. This is mainly due to the fact that we added 6 volumes to the end of the functional runs after a small subset of initial participants. There are a few t1 weighted images with varied resolution, but they were all within +-0.05mm. A few diffusion weighted images have 69 or 65 volumes in contrast to standard 70 volumes. These differences are likely due to occasional scanner updates at the scanning center. 
* We manually created json files for 29 functional runs and 4 anatomical runs because we converted them using spm8 but then the original DICOMs were lost.
  **./sub-5085/ses-5/anat/sub-5085_ses-5_acq-D1S1_T1w.json
  **./sub-5085/ses-5/anat/sub-5085_ses-5_acq-D1S3_T1w.json
  **./sub-5085/ses-5/anat/sub-5085_ses-5_acq-D1S2_T1w.json
  **./sub-5347/ses-5/anat/sub-5347_ses-5_acq-D1S1_T1w.json
  **./sub-5085/ses-5/func/sub-5085_ses-5_task-Phon_acq-D1S4_run-01_bold.json
  **./sub-5085/ses-5/func/sub-5085_ses-5_task-Phon_acq-D1S5_run-02_bold.json
  **./sub-5032/ses-7/func/sub-5032_ses-7_task-Phon_acq-D2S5_run-01_bold.json
  **./sub-5365/ses-9/func/sub-5365_ses-9_task-Phon_acq-D1S4_run-01_bold.json
  **./sub-5365/ses-9/func/sub-5365_ses-9_task-Phon_acq-D1S3_run-02_bold.json
  **./sub-5211/ses-9/func/sub-5211_ses-9_task-Phon_acq-D1S5_run-02_bold.json
  **./sub-5211/ses-9/func/sub-5211_ses-9_task-Phon_acq-D1S6_run-01_bold.json
  **./sub-5085/ses-5/func/sub-5085_ses-5_task-Sem_acq-D3S4_run-02_bold.json
  **./sub-5085/ses-5/func/sub-5085_ses-5_task-Sem_acq-D3S3_run-01_bold.json
  **./sub-5061/ses-5/func/sub-5061_ses-5_task-Sem_acq-D3S4_run-02_bold.json
  **./sub-5061/ses-5/func/sub-5061_ses-5_task-Sem_acq-D3S3_run-01_bold.json
  **./sub-5061/ses-5/func/sub-5061_ses-5_task-Sem_acq-D3S7_run-02_bold.json
  **./sub-5347/ses-5/func/sub-5347_ses-5_task-Sem_acq-D1S6_run-01_bold.json
  **./sub-5347/ses-5/func/sub-5347_ses-5_task-Sem_acq-D1S5_run-02_bold.json
  **./sub-5085/ses-5/func/sub-5085_ses-5_task-Gram_acq-D1S7_run-02_bold.json
  **./sub-5085/ses-5/func/sub-5085_ses-5_task-Gram_acq-D1S6_run-01_bold.json
  **./sub-5085/ses-5/func/sub-5085_ses-5_task-Gram_acq-D3S5_run-02_bold.json
  **./sub-5032/ses-7/func/sub-5032_ses-7_task-Gram_acq-D2S4_run-02_bold.json
  **./sub-5032/ses-7/func/sub-5032_ses-7_task-Gram_acq-D2S3_run-01_bold.json
  **./sub-5211/ses-9/func/sub-5211_ses-9_task-Gram_acq-D1S3_run-02_bold.json
  **./sub-5211/ses-9/func/sub-5211_ses-9_task-Gram_acq-D1S4_run-01_bold.json
  **./sub-5365/ses-9/func/sub-5365_ses-9_task-Gram_acq-D1S6_run-01_bold.json
  **./sub-5365/ses-9/func/sub-5365_ses-9_task-Gram_acq-D1S5_run-02_bold.json
  **./sub-5085/ses-5/func/sub-5085_ses-5_task-Plaus_acq-D2S3_run-01_bold.json
  **./sub-5085/ses-5/func/sub-5085_ses-5_task-Plaus_acq-D2S4_run-02_bold.json
  **./sub-5061/ses-5/func/sub-5061_ses-5_task-Plaus_acq-D3S5_run-01_bold.json
  **./sub-5061/ses-5/func/sub-5061_ses-5_task-Plaus_acq-D3S6_run-02_bold.json
  **./sub-5347/ses-5/func/sub-5347_ses-5_task-Plaus_acq-D1S4_run-01_bold.json
  **./sub-5347/ses-5/func/sub-5347_ses-5_task-Plaus_acq-D1S3_run-02_bold.json

* The calculation of reaction time (rt) and accuracy (acc) for each condition within each run for each participant is documented in ./derivatives/func_mv_acc_rt/Acc_RT_Calculation.doc