1.7.0 2022-06-15 - Added alternative file format for participant demographic information within bidsignore directory 1.6.0 2022-06-15 - Minor issues with file access fixed 1.5.0 2022-06-13 - updated labeling in participants.tsv 1.4.1 2020-07-21 - Removed redundant file in one participant directory 1.4.0 2020-07-20 - Added files to participant directories. 2.0.0 2020-07-20 - Added files to participant directories. 1.3.1 2020-07-20 - Added files to participant directories 0.03 2019-03-08T09:40:28 - ADD sub-201 to the BIDS directory: /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj (by pyBIDSconv version 1.1.7 : - Convert data: Resting_ep2d_bold_p2_s4_32ch_TR1500_2.1x2.1_68_32-head-Coil to func dcm2niix -b y -ba y -z i -f %s -o /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/temp2 /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/temp - Rename files: /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/temp2/5.nii.gz ---> /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/func/sub-201_task-Resting_bold.nii.gz /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/temp2/5.json ---> /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/func/sub-201_task-Resting_bold.json - Convert data: gre_field_mapping_32ch to fmap dcm2niix -b y -ba y -z i -f %s -o /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/temp2 /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/temp - Rename files: /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/temp2/6_e2.nii.gz ---> /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/fmap/sub-201_magnitude1.nii.gz /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/temp2/6_e2.json ---> /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/fmap/sub-201_magnitude1.json /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/temp2/6_e1.nii.gz ---> /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/fmap/sub-201_magnitude2.nii.gz /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/temp2/6_e1.json ---> /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/fmap/sub-201_magnitude2.json - Convert data: gre_field_mapping_32ch to fmap dcm2niix -b y -ba y -z i -f %s -o /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/temp2 /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/temp - Rename files: /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/temp2/7_ph.nii.gz ---> /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/fmap/sub-201_phasediff.nii.gz /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/temp2/7_ph.json ---> /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/fmap/sub-201_phasediff.json - Convert data: t1_mprage_sag_HCP_256_32ch to anat dcm2niix -b y -ba y -z i -f %s -o /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/temp2 /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/temp - Rename files: /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/temp2/8.nii.gz ---> /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/anat/sub-201_T1w.nii.gz /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/temp2/8.json ---> /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/anat/sub-201_T1w.json - Convert data: t1_mprage_sag_HCP_256_32ch to anat dcm2niix -b y -ba y -z i -f %s -o /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/temp2 /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/temp - Rename files: /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/temp2/9.nii.gz ---> /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/anat/sub-201_rec-NORM_T1w.nii.gz /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/temp2/9.json ---> /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/anat/sub-201_rec-NORM_T1w.json - Create scan tsv file: /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/sub-201_scans.tsv - Add info to .json files: Add to func/sub-201_task-Resting_bold.json: TaskName: Resting Add IntendedFor to fmap .json file: fmap/sub-201_magnitude1.json: IntendedFor: func/sub-201_task-Resting_bold.nii.gz Add IntendedFor to fmap .json file: fmap/sub-201_magnitude2.json: IntendedFor: func/sub-201_task-Resting_bold.nii.gz Add IntendedFor to fmap .json file: fmap/sub-201_phasediff.json: IntendedFor: func/sub-201_task-Resting_bold.nii.gz Add both echo times to phasediff fmap .json file: fmap/sub-201_phasediff.json - Load participant.tsv file and add/replace: sub-201 33 F 0.02 2019-03-08T09:36:14 - ADD sub-201 to the BIDS directory: /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj (by pyBIDSconv version 1.1.7 : - Convert data: Resting_ep2d_bold_p2_s4_32ch_TR1500_2.1x2.1_68_32-head-Coil to func dcm2niix -b y -ba y -z i -f %s -o /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/temp2 /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/temp - Rename files: /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/temp2/5.nii.gz ---> /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/func/sub-201_task-Resting_bold.nii.gz /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/temp2/5.json ---> /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/func/sub-201_task-Resting_bold.json - Convert data: gre_field_mapping_32ch to fmap dcm2niix -b y -ba y -z i -f %s -o /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/temp2 /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/temp - Rename files: /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/temp2/6_e1.nii.gz ---> /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/fmap/sub-201_magnitude1.nii.gz /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/temp2/6_e1.json ---> /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/fmap/sub-201_magnitude1.json /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/temp2/6_e2.nii.gz ---> /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/fmap/sub-201_magnitude2.nii.gz /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/temp2/6_e2.json ---> /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/fmap/sub-201_magnitude2.json - Convert data: gre_field_mapping_32ch to fmap dcm2niix -b y -ba y -z i -f %s -o /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/temp2 /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/temp - Rename files: /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/temp2/7_ph.nii.gz ---> /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/fmap/sub-201_phasediff.nii.gz /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/temp2/7_ph.json ---> /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/fmap/sub-201_phasediff.json - Convert data: t1_mprage_sag_HCP_256_32ch to anat dcm2niix -b y -ba y -z i -f %s -o /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/temp2 /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/temp - Rename files: /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/temp2/8.nii.gz ---> /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/anat/sub-201_T1w.nii.gz /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/temp2/8.json ---> /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/anat/sub-201_T1w.json - Convert data: t1_mprage_sag_HCP_256_32ch to anat dcm2niix -b y -ba y -z i -f %s -o /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/temp2 /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/temp - Rename files: /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/temp2/9.nii.gz ---> /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/anat/sub-201_rec-NORM_PD.nii.gz /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/temp2/9.json ---> /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/anat/sub-201_rec-NORM_PD.json - Create scan tsv file: /storage/shared/research/cinn/2015/L2ukca/regress_study/Sharing/BL_spec_proj/sub-201/sub-201_scans.tsv - Add info to .json files: Add to func/sub-201_task-Resting_bold.json: TaskName: Resting Add IntendedFor to fmap .json file: fmap/sub-201_magnitude1.json: IntendedFor: func/sub-201_task-Resting_bold.nii.gz Add IntendedFor to fmap .json file: fmap/sub-201_magnitude2.json: IntendedFor: func/sub-201_task-Resting_bold.nii.gz Add IntendedFor to fmap .json file: fmap/sub-201_phasediff.json: IntendedFor: func/sub-201_task-Resting_bold.nii.gz Add both echo times to phasediff fmap .json file: fmap/sub-201_phasediff.json - Load participant.tsv file and add/replace: sub-201 33 F 0.01 2019-03-08T08:45:42 - Initial release.